cellpheno.permutateIndividuals: cellpheno.permutateIndividuals

In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Description

Tests for differences in iPSC cellular morphology between groups of random individuals.

Usage

cellpheno.permutateIndividuals(
  nbIndividuals = 2,
  nbClone = 2,
  maxTests = 300,
  logT = FALSE,
  testfunc = .ttp,
  agTechRep = mean,
  doSave = TRUE,
  returnResults = FALSE,
  ncores = NULL
)

Arguments

nbIndividuals	A positive integer indicating the number of individuals in each group (default 2).
nbClone	The number of iPSC clones to consider from each individual (default 2)
maxTests	The maximum number of tests to run (default 300).
logT	Whether to log-transform the data before testing (default FALSE)
testfunc	Function used for testing. Defaults to '.ttp' (t-test)
agTechRep	Function used to aggregate technical replicates (default: mean)
doSave	Whether to save the results (default TRUE).
returnResults	Whether to return the results (default FALSE).
ncores	Integer; number of cores to use. Defaults to detected number of cores minus one.

Value

Nothing (results save to files), or a data.frame if returnResults=TRUE.

plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.