multiProbSpurious: multiProbSpurious
In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling
Description
Usage
Arguments
Value
Description
Annotates a data.frame of DEA results (such as produced by edgeR's 'topTags' function) with the probability of each gene and foldchange in the DEA permutations.
Usage
1
multiProbSpurious(d, FCfield = "logFC", FDRfield = NULL)
Arguments
d
A data.frame of differential expression results, but HGNC symbols as row.names and a column indicating the log2 foldchange.
FCfield
The name of the column in 'd' containing the log2(foldchange) (default 'logFC').
FDRfield
Optional; the name of the column in 'd' containing the FDR. If given, a column will be added with the maximum of the FDR and the probability of DE in the permuations. (default disabled)
Value
The data.frame d, with the addition columns probDEinPermutations and probFCinPermutations
plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.
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Description Usage Arguments Value
Description
Annotates a data.frame of DEA results (such as produced by edgeR's 'topTags' function) with the probability of each gene and foldchange in the DEA permutations.
Usage
1 | multiProbSpurious(d, FCfield = "logFC", FDRfield = NULL)
|
Arguments
d |
A data.frame of differential expression results, but HGNC symbols as row.names and a column indicating the log2 foldchange. |
FCfield |
The name of the column in 'd' containing the log2(foldchange) (default 'logFC'). |
FDRfield |
Optional; the name of the column in 'd' containing the FDR. If given, a column will be added with the maximum of the FDR and the probability of DE in the permuations. (default disabled) |
Value
The data.frame d, with the addition columns probDEinPermutations and probFCinPermutations
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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