plotPrecisionScatter: plotPrecisionScatter

In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Description

Plots the sensitivity and false discovery rate of a list of results of permutation analyses (i.e. permres files or output of readPermResults).

Usage

plotPrecisionScatter(
  results,
  plotSD = T,
  x = "fdr",
  labels = NULL,
  acol = "grey",
  alty = 1,
  alwd = 1,
  threshold = 0.05,
  ...
)

Arguments

results	A vector of permutation results files or the output of 'readPermResults'.
plotSD	Logical; whether to plot the standard deviation for each point (default TRUE).
x	X axis value, either "fp" (false positives) or "fdr" (false discovery rate, default).
labels	An optional character vector of labels to print.
acol	color of the SD bars (default gray)
alty	line type of the SD bars (default solid)
alwd	line width of the SD bars (default 1)
...	arguments passed to the plot function.

Value

Nothing, but generates a plot.

plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.