getRecurrentGenes: getRecurrentGenes

In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Description

Returns the frequencing of each gene being found differentially expressed in the permutation analyses.

Usage

getRecurrentGenes(
  permResults,
  removeInputDE = TRUE,
  varToFetch = "pval.below.05",
  d = NULL
)

Arguments

permResults	Either the results of the 'DEA.permutateIndividuals' or 'DEA.permutateClones' function, or a character vector of the files in which the outpout of these functions was save.
removeInputDE	Whether to remove the input DEGs (default TRUE)
varToFetch	Variable to fetch, any of: 'pval.below.05', 'pval.below.01', 'FDR.below.05', 'FDR.below.01' (default 'pval.below.05').
d	For internal use.

Value

A data.frame.

plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.