getSensitivityMatrix: getSensitivityMatrix

In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling

Description

Retrieves and eventually plot a sensitivity matrix across foldchanges and expression levels. Use the higher-level function 'getSensitivityMatrices' instead.

Usage

getSensitivityMatrix(res, bins = 5, unlogExpr = T, doPlot = T)

Arguments

res	A list such as one of the items returned by the 'readPermResults()' function.
bins	Either an integer indicating the number of bins in which to (try to) split the expression levels (default 5), or a vectors of breaks defining the bins.
unlogExpr	Whether to "un-log" read counts for labels (default TRUE).
doPlot	Whether to plot rather than return the matrix (default TRUE).

Value

either a heatmap or a matrix.

plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.