fpkm: Convert counts to FPKM values
In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling
Description
Usage
Arguments
Value
Description
Convert fragment counts to FPKM values, using the sum as library size. By default, effective length is used; set mean.frag.size to 0 to use total (given) length.
Usage
1
fpkm(counts, mean.frag.size = 500, removeShorter = F)
Arguments
counts
A numeric dataframe or matrix, with transcripts as rows.
mean.frag.size
A numeric value indicating the mean fragment size (default 220) used for effective length calculation.
removeShorter
Logical; whether to remove transcripts whose length is shorter than the mean fragment size (default FALSE).
Value
A dataframe containing the corresponding FPKM values.
plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.
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Description Usage Arguments Value
Description
Convert fragment counts to FPKM values, using the sum as library size. By default, effective length is used; set mean.frag.size to 0 to use total (given) length.
Usage
1 | fpkm(counts, mean.frag.size = 500, removeShorter = F)
|
Arguments
counts |
A numeric dataframe or matrix, with transcripts as rows. |
mean.frag.size |
A numeric value indicating the mean fragment size (default 220) used for effective length calculation. |
removeShorter |
Logical; whether to remove transcripts whose length is shorter than the mean fragment size (default FALSE). |
Value
A dataframe containing the corresponding FPKM values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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