edgeRwrapper: edgeRwrapper
In plger/iPSCpoweR: iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling
Description
Usage
Arguments
Value
Description
Performs one differential expression analysis using edgeR.
Usage
1
edgeRwrapper(e, mm = NULL, DEsamples = NULL, paired = FALSE, nested = NULL)
Arguments
e
the expression matrix
mm
the design model (as created by the ‘model.matrix()’ function), for paired analyses only. Default NULL.
DEsamples
the index of the samples in which the differential expression was added. Mandatory if mm=NULL, ignored otherwise.
paired
Logical; whether the analysis should be paired or not.
nested
Ignored; for consistency with voomWrapper.
Value
A data.frame.
plger/iPSCpoweR documentation built on Feb. 2, 2022, 1:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Performs one differential expression analysis using edgeR.
Usage
1 | edgeRwrapper(e, mm = NULL, DEsamples = NULL, paired = FALSE, nested = NULL)
|
Arguments
e |
the expression matrix |
mm |
the design model (as created by the ‘model.matrix()’ function), for paired analyses only. Default NULL. |
DEsamples |
the index of the samples in which the differential expression was added. Mandatory if mm=NULL, ignored otherwise. |
paired |
Logical; whether the analysis should be paired or not. |
nested |
Ignored; for consistency with voomWrapper. |
Value
A data.frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.