Imports and process MSI data using a friendly GUI. Various images can be loaded and processed with a single execution. Data can be in XMASS, tar (rMSI) or imzML format. Processed data will be saved in a user specified directory. The applied processing consists in: - Label-free aligment (various iterations can be performed, zero iterations means no alignment). - Peak-picking. - Peak-binning. - Mass calibration with internal reference compounds. Processed data includes: - a .tar file with the processed data. - a rMSIproc formated matrices with binned peaks. - a plain text file with used processing parameters.
1 2 3 4 5 6 | ProcessWizard(
deleteRamdisk = T,
overwriteRamdisk = F,
calibrationSpan = 0.75,
store_binsize_txt_file = F
)
|
deleteRamdisk |
if the used ramdisks for MS images must be deleted for each image processing (will be deleted after saving it to .tar file). |
overwriteRamdisk |
if the current ramdisk must be overwrited. |
calibrationSpan |
the used span in the loess fitting for mass calibration. |
store_binsize_txt_file |
if the binSize used in each binning column must be soterd in a text file. |
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