runMagic: Affinity Graph-based Smoothing
In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq
runMagic R Documentation
Affinity Graph-based Smoothing
Description
This function takes a snap object as input with bmat/pmat/gmat/mmat slot
and run magic - an affinity graph-based method - to smooth the signal.
Usage
runMagic(obj, input.mat = c("gmat", "pmat", "bmat", "mmat"), step.size = 3)
Arguments
obj
A snap obj
input.mat
Input matrix c("bmat", "pmat", "gmat", "mmat").
step.size
Number of steps for diffusion [3].
r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.
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| runMagic | R Documentation |
Affinity Graph-based Smoothing
Description
This function takes a snap object as input with bmat/pmat/gmat/mmat slot and run magic - an affinity graph-based method - to smooth the signal.
Usage
runMagic(obj, input.mat = c("gmat", "pmat", "bmat", "mmat"), step.size = 3)
Arguments
obj |
A snap obj |
input.mat |
Input matrix c("bmat", "pmat", "gmat", "mmat"). |
step.size |
Number of steps for diffusion [3]. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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