readSynergyPlate: Read Synergy Mx Plate Data

In raim/platexpress: Inspection and Analysis of Microbial Growth and Gene Expression Data

Description

Parses date exported from the Excel file that can be exported from the Biotek Synergy Mx platereader. A parameter that often changes is skip, the number of lines before the data starts, here before the ID of a measurement in the first column, eg. "600" for OD measurement at 600 nm.

Usage

readSynergyPlate(
  files,
  data.ids,
  skip,
  sep = ";",
  dec = ".",
  skiplastcol = FALSE,
  time.format = "%H:%M:%S",
  verb = TRUE
)

Arguments

files	list of one or more data files
data.ids	an optional sub-selection of data types in the input file, as a list of strings
skip	lines to skip before parsing data
sep	field separator used in the input tabular file
dec	decimal operator used in data file (e.g., ',' if data export was with german language settings)
skiplastcol	the last column is often empty, set to TRUE if this is the case for the current data set
time.format	format of the time, e.g., " strptime), or "numeric" if the time is provided in normal numbers
verb	print messages if true

Author(s)

Rainer Machne [e-mail]

See Also

readPlateData

raim/platexpress documentation built on Jan. 18, 2022, 1:41 p.m.