API for ramses-antibiotics/ramses-package
R Package for Antimicrobial Stewardship & Surveillance

Global functions
.build_tally_table Source code
.clinical_feature_field_name_generate Source code
.clinical_feature_interval Source code
.clinical_feature_last Source code
.clinical_feature_mean Source code
.clinical_feature_object_id_field Source code
.clinical_feature_observations_fetch Source code
.clinical_feature_ols_trend Source code
.clinical_feature_threshold Source code
.clinical_investigation_code_validate Source code
.compute_bed_days Source code
.compute_longitudinal_objects Source code
.create_combination_id Source code
.create_sql_index Source code
.create_sql_primary_key Source code
.create_table_drug_prescriptions_edges Source code
.create_table_drug_therapy_episodes Source code
.create_therapy_id Source code
.drug_administrations_variables Source code
.drug_prescriptions_variables Source code
.format_id_as_character Source code
.inpatient_diagnoses_data_variables Source code
.inpatient_diagnoses_lookup_variables Source code
.inpatient_episodes_variables Source code
.inpatient_investigations_variables Source code
.inpatient_microbiology_variables Source code
.inpatient_patients_variables Source code
.inpatient_wards_variables Source code
.load_administrations Source code
.load_prescriptions Source code
.longitudinal_table_completeness_check Source code
.longitudinal_table_create.Encounter Source code
.longitudinal_table_create.TherapyEpisode Source code
.longitudinal_table_parenteral_indicator Source code
.map_ICD10_CCSX Source code
.nrow_sql_table Source code
.parenteral_vector_process Source code
.print_and_capture Source code
.read_sql_syntax Source code
.remove_db_tables Source code
.run_transitive_closure Source code
.split_sql_batch Source code
.sql_data_type Source code
.therapy_timeline_create Source code
.therapy_timeline_get_admissions Source code
.therapy_timeline_get_diagnoses Source code
.therapy_timeline_get_drugs Source code
.therapy_timeline_get_micro Source code
.throw_error_method_not_implemented Source code
.validate_UCUM_codes Source code
.validate_extended_table_input Source code
.validate_inpatient_encounters Source code
.validate_inpatient_episode_dates Source code
.validate_inpatient_wards Source code
.validate_values_unique Source code
.validate_variable_exist Source code
.validate_variable_no_missing Source code
Encounter Man page Source code
Encounter-class Man page
MedicationRequest Man page Source code
MedicationRequest-class Man page
Patient Man page Source code
Patient-class Man page
Patient.DBIConnection Man page Source code
Patient.RamsesObject Man page Source code
Ramses Man page
Ramses-deprecated Man page
Ramses-package Man page
RamsesObject-class Man page
TherapyEpisode Man page Source code
TherapyEpisode-class Man page
TherapyEpisode.DBIConnection Man page Source code
TherapyEpisode.MedicationRequest Man page Source code
antibiotic_icd_indications Man page
arrange_variables Source code
bridge_encounter_therapy_overlap Man page Source code
bridge_episode_prescription_initiation Man page Source code
bridge_episode_prescription_overlap Man page Source code
bridge_spell_therapy_overlap Man page Source code
bridge_tables Man page Source code
ccs Man page
ccsr Man page
clinical_feature_interval Man page
clinical_feature_interval,RamsesObject-method Man page
clinical_feature_last Man page
clinical_feature_last,RamsesObject-method Man page
clinical_feature_mean Man page
clinical_feature_mean,RamsesObject-method Man page
clinical_feature_ols_trend Man page
clinical_feature_ols_trend,RamsesObject-method Man page
collect Man page
collect,Encounter-method Man page
collect,RamsesObject-method Man page
collect,TherapyEpisode-method Man page
compute Man page
compute,Encounter-method Man page
compute,RamsesObject-method Man page
compute,TherapyEpisode-method Man page
compute_DDDs Man page Source code
connect_local_database Man page Source code
create_mock_database Man page Source code
create_therapy_episodes Man page Source code
download_icd10cm Man page Source code
drug_administrations Man page
drug_prescriptions Man page
get_ATC_name Man page Source code
import_icd Man page Source code
inpatient_diagnoses Man page
inpatient_episodes Man page
inpatient_investigations Man page
inpatient_microbiology Man page
inpatient_wards Man page
load_inpatient_diagnoses Man page Source code
load_inpatient_episodes Man page Source code
load_inpatient_investigations Man page Source code
load_inpatient_microbiology Man page Source code
load_medications Man page Source code
longitudinal_table Man page
longitudinal_table,Encounter-method Man page
longitudinal_table,MedicationRequest-method Man page
longitudinal_table,TherapyEpisode-method Man page
map_ICD10_CCS Man page Source code
map_ICD10_CCSR Man page Source code
map_charlson_comorbidities Man page Source code
map_infections_abx_indications Man page Source code
parenteral_changes Man page Source code
patients Man page
reference_aware Man page
reference_drug_frequency Man page
reference_loinc Man page
reference_specimen_type Man page
show,Encounter-method Man page
show,MedicationRequest-method Man page
show,RamsesObject-method Man page
show,TherapyEpisode-method Man page
therapy_table Man page Source code
therapy_timeline Man page
therapy_timeline,Encounter-method Man page
therapy_timeline,MedicationRequest-method Man page
therapy_timeline,Patient-method Man page
therapy_timeline,TherapyEpisode-method Man page
transitive_closure_control Man page Source code
validate_administrations Man page Source code
validate_inpatient_diagnoses Man page Source code
validate_inpatient_episodes Man page Source code
validate_investigations Man page Source code
validate_microbiology Man page Source code
validate_prescriptions Man page Source code
ramses-antibiotics/ramses-package documentation built on Feb. 13, 2024, 1:01 p.m.