Files in ramses-antibiotics/ramses-package
R Package for Antimicrobial Stewardship & Surveillance
.Rbuildignore
.covrignore
.firebaserc
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/Ramses-deprecated.R
R/Ramses-package.R
R/clinical_features.R
R/database.R
R/example_records.R
R/metadata.R
R/objects.R
R/reference.R
R/sysdata.rda
R/timeline.R
R/utils.R
R/validate_data.R
R/zzz.R
README.md
_pkgdown.yml
data-raw/Loinc_2.70_Text_2.70.zip
data-raw/antibiotic_icd_indications.R
data-raw/antibiotic_icd_indications.csv
data-raw/aware_england.csv
data-raw/ccs.R
data-raw/ccsr.R
data-raw/drug_administrations.csv
data-raw/drug_administrations2.csv
data-raw/drug_prescriptions.csv
data-raw/drug_prescriptions2.csv
data-raw/inpatient_diagnoses.csv
data-raw/inpatient_diagnoses2.csv
data-raw/inpatient_episodes.R
data-raw/inpatient_episodes.csv
data-raw/inpatient_episodes2.csv
data-raw/inpatient_investigations.csv
data-raw/inpatient_microbiology.csv
data-raw/inpatient_wards.csv
data-raw/inpatient_wards2.csv
data-raw/medications.R
data-raw/ramses_mock_dataset.R
data-raw/reference_aware.R
data-raw/reference_drug_frequency.R
data-raw/reference_drug_frequency.csv
data-raw/reference_loinc.R
data-raw/reference_specimen_type.R
data/antibiotic_icd_indications.rda
data/ccs.rda
data/ccsr.rda
data/drug_administrations.rda
data/drug_prescriptions.rda
data/inpatient_diagnoses.rda
data/inpatient_episodes.rda
data/inpatient_investigations.rda
data/inpatient_microbiology.rda
data/inpatient_wards.rda
data/patients.rda
data/reference_aware.rda
data/reference_drug_frequency.rda
data/reference_loinc.rda
data/reference_specimen_type.rda
firebase.json
inst/ICD10_mock_file.zip
inst/REFERENCES.bib
inst/SQL/drug_prescriptions_edges_PostgreSQL.sql
inst/Schema/drug_administrations.csv
inst/Schema/drug_prescriptions.csv
inst/Schema/inpatient_diagnoses_data.csv
inst/Schema/inpatient_diagnoses_lookup.csv
inst/Schema/inpatient_episodes.csv
inst/Schema/inpatient_investigations.csv
inst/Schema/inpatient_wards.csv
inst/Schema/microbiology_isolates.csv
inst/Schema/microbiology_specimens.csv
inst/Schema/microbiology_susceptibilities.csv
inst/Schema/patients.csv
inst/test_cases/prescription_linkage_edges_classes.csv
inst/test_cases/prescription_linkage_prescriptions.csv
man/Encounter.Rd
man/MedicationRequest.Rd
man/Patient.Rd
man/Ramses-deprecated.Rd
man/Ramses-package.Rd
man/RamsesObject.Rd
man/TherapyEpisode.Rd
man/antibiotic_icd_indications.Rd
man/bridge_spell_therapy_overlap-deprecated.Rd
man/bridge_tables.Rd
man/ccs.Rd
man/ccsr.Rd
man/clinical_feature_interval.Rd
man/clinical_feature_last.Rd
man/clinical_feature_mean.Rd
man/clinical_feature_ols_trend.Rd
man/collect.Rd
man/compute.Rd
man/compute_DDDs.Rd
man/connect_local_database.Rd
man/create_mock_database.Rd
man/create_therapy_episodes.Rd
man/download_icd10cm.Rd
man/drug_administrations.Rd
man/drug_prescriptions.Rd
man/figures/favicon.png
man/figures/logo.png
man/figures/partner-logos/ESRC.svg
man/figures/partner-logos/NIHR.svg
man/figures/partner-logos/PASS.svg
man/figures/partner-logos/UCL.png
man/figures/partner-logos/rosetree.png
man/get_ATC_name.Rd
man/import_icd.Rd
man/inpatient_diagnoses.Rd
man/inpatient_episodes.Rd
man/inpatient_investigations.Rd
man/inpatient_microbiology.Rd
man/inpatient_wards.Rd
man/load_inpatient_diagnoses.Rd
man/load_inpatient_episodes.Rd
man/load_inpatient_investigations.Rd
man/load_inpatient_microbiology.Rd
man/load_medications.Rd
man/longitudinal_table.Rd
man/map_ICD10_CCS.Rd
man/map_charlson_comorbidities.Rd
man/map_infections_abx_indications.Rd
man/parenteral_changes.Rd
man/patients.Rd
man/reference_aware.Rd
man/reference_drug_frequency.Rd
man/reference_loinc.Rd
man/reference_specimen_type.Rd
man/show.Rd
man/therapy_table-deprecated.Rd
man/therapy_timeline.Rd
man/transitive_closure_control.Rd
man/validate_administrations.Rd
man/validate_inpatient_diagnoses.Rd
man/validate_inpatient_episodes.Rd
man/validate_investigations.Rd
man/validate_microbiology.Rd
man/validate_prescriptions.Rd
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
pkgdown/favicon/style.css
ramses-package.Rproj
tests/testthat.R
tests/testthat/test-clinical-features.R
tests/testthat/test-database.R
tests/testthat/test-metadata.R
tests/testthat/test-objects.R
tests/testthat/test-timeline.R
tests/testthat/test-utils.R
tests/testthat/test-validate_data.R
tests/testthat/test-warehousing-duckdb.R
tests/testthat/test-warehousing-postgres.R
vignettes/.gitignore
vignettes/Ramses.Rmd
vignettes/load-data.Rmd
vignettes/ramses-objects.Rmd
vignettes/ramses-objects/ramses-class-diagram.gv
vignettes/ramses-objects/ramses-micro-class-diagram.gv
vignettes/ramses-objects/tbl-class-diagram.gv
vignettes/therapy-episodes.Rmd
vignettes/therapy-episodes/cat-1.svg
vignettes/therapy-episodes/cat-2.svg
vignettes/therapy-episodes/cat-3.svg
vignettes/therapy-episodes/cat-4.svg
vignettes/therapy-episodes/cat-5.svg
vignettes/therapy-episodes/cat-6.svg
vignettes/therapy-episodes/cat-7.svg
vignettes/therapy-episodes/diagram_linked.gif
vignettes/therapy-episodes/diagram_raw.gif
