API for rezakj/scSeqR
scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.
| Global functions | |
|---|---|
| add.adt | Man page |
| add.vdj | Man page |
| adt.rna.merge | Man page |
| cell.filter | Man page |
| cell.gating | Man page Source code |
| change.clust | Man page |
| clust.avg.exp | Man page |
| clust.cond.info | Man page |
| clust.rm | Man page |
| clust.stats.plot | Man page |
| cluster.plot | Man page |
| data.aggregation | Man page |
| data.scale | Man page |
| diff.exp | Man page |
| down.sample | Man page |
| find.dim.genes | Man page |
| findMarkers | Man page |
| gate.to.clust | Man page Source code |
| gene.plot | Man page |
| gene.stats | Man page |
| heatmap.gg.plot | Man page |
| heatmap.plot | Man page |
| imm.gen | Man page |
| load10x | Man page |
| lvbsc | Man page |
| make.gene.model | Man page |
| make.obj | Man page |
| make.scseqr.obj | Man page |
| man.assign.clust | Man page |
| norm.adt | Man page |
| norm.data | Man page |
| opt.clust.num | Man page |
| opt.pcs.plot | Man page |
| prep.vdj | Man page |
| pseudotime.tree | Man page |
| qc.stats | Man page |
| run.clustering | Man page |
| run.diff.st | Man page |
| run.diffusion.map | Man page |
| run.magic | Man page |
| run.pc.tsne | Man page |
| run.pca | Man page |
| run.tsne | Man page |
| run.umap | Man page |
| stats.plot | Man page |
| top.markers | Man page |
| tsne.plot | Man page |
| volcano.ma.plot | Man page |
