load10x: Load 10X data as data.frame

In rezakj/scSeqR: scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.

Load 10X data as data.frame

Description

This function takes 10X data files barcodes.tsv, genes.tsv and matrix.mtx and converts them to proper matrix file for scSeqR.

Usage

load10x(dir.10x = NULL, gene.name = "geneSymbol")

Arguments

dir.10x	A directory that includes the 10X barcodes.tsv, genes.tsv and matrix.mtx files.
gene.name	Should be either geneSymbol or ensembleID.

Value

The data frame object

Examples

## Not run: 
load10x("/hg19", gene.name = "geneSymbol")

## End(Not run)

rezakj/scSeqR documentation built on March 28, 2022, 12:17 p.m.