clust.stats.plot | R Documentation |
This function takes an object of class scSeqR and creats QC plot.
clust.stats.plot(x = NULL, plot.type = "box.mito", cell.color = "slategray3", cell.size = 1, cell.transparency = 0.5, box.color = "red", box.line.col = "green", back.col = "white", notch = F, interactive = TRUE, out.name = "plot")
x |
An object of class scSeqR. |
plot.type |
Choose from "box.umi", "box.mito", "box.gene", defult = "box.mito". |
cell.color |
Choose a color for points in the plot. |
cell.size |
A number for the size of the points in the plot, defult = 1. |
cell.transparency |
Color transparency for points in "scatterplot" and "boxplot", defult = 0.5. |
box.color |
A color for the boxes in the "boxplot", defult = "red". |
box.line.col |
A color for the lines around the "boxplot", defult = "green". |
notch |
Notch the box plots, defult = F. |
interactive |
If set to TRUE an intractive HTML file will be created, defult = TRUE. |
out.name |
If "interactive" is set to TRUE, the out put name for HTML, defult = "plot". |
An object of class scSeqR.
## Not run: clust.stats.plot(my.obj, plot.type = "box.mito", interactive = F, out.name = "box.mito.clusters") ## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.