top.markers: Choose top marker genes

In rezakj/scSeqR: scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.

Choose top marker genes

Description

This function takes the marker genes info if chooses marker gene names for plots.

Usage

top.markers(x = NULL, topde = 10, min.base.mean = 0.2, cluster = 0)

Arguments

x	An object of class scSeqR.
topde	Number of top differentialy expressed genes to be choosen from each cluster, defult = 10.
min.base.mean	Minimum base mean of the genes to be choosen, defult = 0.5.

Value

A set of gene names

Examples

## Not run: 
MyGenes <- top.markers(marker.genes, topde = 10, min.base.mean = 0.8)

## End(Not run)

rezakj/scSeqR documentation built on March 28, 2022, 12:17 p.m.