diff.exp | R Documentation |
This function takes an object of class scSeqR and performs differential expression (DE) analysis for clusters and conditions.
diff.exp(x = NULL, de.by = "clusters", cond.1 = "array", cond.2 = "array", base.cond = 0)
x |
An object of class scSeqR. |
de.by |
Choose from "clusters", "conditions", "clustBase.condComp" or "condBase.clustComp". |
cond.1 |
First condition to do DE analysis on. |
cond.2 |
Second condition to do DE analysis on. |
base.cond |
A base condition or cluster if de.by is either cond.clust or clust.cond |
An object of class scSeqR
## Not run: diff.res <- diff.exp(my.obj, de.by = "clusters", cond.1 = c(1,4), cond.2 = c(2)) diff.res <- diff.exp(my.obj, de.by = "conditions", cond.1 = c("WT"), cond.2 = c("KO")) diff.res <- diff.exp(my.obj, de.by = "clustBase.condComp", cond.1 = c("WT"), cond.2 = c("KO"), base.cond = 1) diff.res <- diff.exp(my.obj, de.by = "condBase.clustComp", cond.1 = c(1), cond.2 = c(2), base.cond = "WT") ## End(Not run)
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