View source: R/gate.to.clust.R
gate.to.clust | R Documentation |
This function takes an object of class scSeqR and runs PCA on the main data.
gate.to.clust(x = NULL, my.gate = NULL, to.clust = 0)
x |
An object of class scSeqR. |
clust.method |
Choose from "base.mean.rank" or "gene.model", defult is "base.mean.rank". |
top.rank |
A number taking the top genes ranked by base mean, defult = 500. |
gene.list |
A list of genes to be used for PCA. If "clust.method" is set to "gene.model", defult = "my_model_genes.txt". |
An object of class scSeqR.
## Not run: my.obj <- run.pca(my.obj, clust.method = "gene.model", gene.list = "my_model_genes.txt") ## End(Not run)
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