change.clust: Change the cluster number or re-name them

In rezakj/scSeqR: scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.

Change the cluster number or re-name them

Description

This function re-names the clusters in the best.clust slot of the scSeqR object.

Usage

change.clust(x = NULL, change.clust = 0, to.clust = 0,
  clust.reset = F)

Arguments

x	An object of class scSeqR.
change.clust	The name of the cluster to be changed.
to.clust	The new name for the cluster.
clust.reset	Reset to the original clustering.

Value

An object of class scSeqR.

Examples

## Not run: 
my.obj <- change.clust(my.obj, change.clust = 3, to.clust = 1)
my.obj <- change.clust(my.obj, change.clust = 2, to.clust = "B Cell")
my.obj <- change.clust(my.obj, clust.reset = T)

## End(Not run)

rezakj/scSeqR documentation built on March 28, 2022, 12:17 p.m.