run.tsne | R Documentation |
This function takes an object of class scSeqR and runs tSNE on the main data.
run.tsne(x = NULL, clust.method = "base.mean.rank", top.rank = 500, gene.list = "character")
x |
An object of class scSeqR. |
clust.method |
Choose from "base.mean.rank" or "gene.model", defult is "base.mean.rank". |
top.rank |
A number taking the top genes ranked by base mean, defult = 500. |
gene.list |
A list of genes to be used for tSNE analysis. If "clust.method" is set to "gene.model", defult = "my_model_genes.txt". |
An object of class scSeqR.
## Not run: my.obj <- run.tsne(my.obj, clust.method = "gene.model", gene.list = "my_model_genes.txt") ## End(Not run)
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