run.diff.st: Differentiation spacetime

In rezakj/scSeqR: scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.

Differentiation spacetime

Description

This function takes an object of class scSeqR and finds their progenitor cells based on distance.

Usage

run.diff.st(x = NULL, dist.method = "euclidean")

Arguments

x	An object of class scSeqR.
dist.method	the distance measure to be used to compute the dissimilarity matrix. This must be one of: "euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski" or "NULL". By default, distance="euclidean". If the distance is "NULL", the dissimilarity matrix (diss) should be given by the user. If distance is not "NULL", the dissimilarity matrix should be "NULL".

Value

An object of class scSeqR.

Examples

## Not run: 
my.obj <- dst(my.obj)

## End(Not run)

rezakj/scSeqR documentation built on March 28, 2022, 12:17 p.m.