qc.stats: Calculate the number of UMIs and genes per cell and...

In rezakj/scSeqR: scSeqR; a toolkit to analyze single cell sequencing data types (i.e scRNA-seq) and large numeric matrix files.

Calculate the number of UMIs and genes per cell and percentage of mitochondrial genes per cell.

Description

This function takes data frame and calculates the number of UMIs, genes per cell and percentage of mitochondrial genes per cell.

Usage

qc.stats(x = NULL, which.data = "raw.data", mito.genes = "defult",
  s.phase.genes = s.phase, g2m.phase.genes = g2m.phase)

Arguments

x	A data frame containing gene counts for cells.

Value

The data frame object

Examples

## Not run: 
UMIs.genes.mit(my.data)

## End(Not run)

rezakj/scSeqR documentation built on March 28, 2022, 12:17 p.m.