R/fnc_write_agg_depr.R
In rhabel/modLWFB90: R-package for applying LWF-Brook90 directly from FVA-BW servers
Defines functions
fnc_write_agg_depr
Documented in
fnc_write_agg_depr
#' Function to aggregate and write data from automated LWFB90-Runs
#'
#' LWFBrook90 creates a lot of output files. In order to keep data storage to a minimum, both \code{\link[LWFBrook90R]{run_LWFB90}} and \code{\link[LWFBrook90R]{run_multisite_LWFB90}} provide an \code{output_fun} - argument that can be used to reduce the output and directly write it to a database. This is what this function is made for. \cr In comparison to \code{\link{fnc_write}}, which only reduces the columns returned by \code{\link[LWFBrook90R]{run_LWFB90}} (see help page), this function enables aggregation over vegperiod and monthly, plus a more detailed selection of drought indices. See detail section.\cr\cr IMPORTANT: FOR RUNNING THIS AGGREGATE FUNCTION, \code{output} in \code{run_multiside_LWFB90} MUST BE SET TO A \code{df.output} AS SET BY THE CODE IN THE EXAMPLE SECTION \cr The function writes .rds files with the desired output for each point. \code{\link{fnc_write_to_sql}} can be used to convert these files into a SQLite-DB. This "step-in-between" is necessary because SQLite does not support parallel writing.
#'
#' @param x one of the intermediate producs of \code{\link[LWFBrook90R]{run_LWFB90}} or \code{\link[LWFBrook90R]{run_multisite_LWFB90}}, which is further processed internally. Can't be adjusted.
#' @param aggr_tp a string containing the desired aggregation time period. Can be \code{daily}, \code{monthly}, \code{vegper}, \code{yearly}, or any combination of the four (i.e. \code{monthly_vegper}). The latter does all terms that are detectable within the string.
#' @param col_select_day a string containing the desired columns from the daily-aggregation (see details)
#' @param col_select_mon a string containing the desired columns from the monthly-aggregation (see details)
#' @param col_select_vp a string containing the desired columns from the vegperiod-aggregation (see details)
#' @param col_select_yr a string containing the desired columns from the yearly-aggregation (see details)
#' @param dir_name directory for tmp files, if \code{NA} as in default, results are returned to console
#'
#' @return Returns the desired output to .rds files
#'
#' @section Output column selection:
#' IT IS HIGHLY RECOMMENDED TO MAKE A SUBSELECTION, OR THERE WILL BE A LOT (>100) OF COLUMNS.
#' For a complete list of possible output types plus description, see \code{"U:/db_brook90_output/whh_db_documentation"}
#'
#' @examples
#' # setting for df.output:
#' df.output <- set_outputLWFB90()
#' df.output[,] <- 0L
#' df.output[c("Abov", "Evap", "Flow", "Swat"), c("Day")] <- 1
#'
#' # for full example, see help page of ?fnc_write_to_sql
#'
#' @import data.table
#' @export
fnc_write_agg_depr <- function(x,
aggr_tp,
col_select_day = NA,
col_select_mon = NA,
col_select_vp = NA,
col_select_yr = NA,
dir_name = NA){
# soil.df <- soil
# colnames(soil.df) <- tolower(colnames(soil.df))
# id_name <- soil$id_custom[1]
# id_num <- soil$id[1]
# param_std <- param_b90
# get
soil.df <- get("soil", envir = parent.frame(3))
param_std <- get("param_b90", envir = parent.frame(3))
id_name <- get("soil", envir = parent.frame(3))$id_custom[1]
id_num <- get("soil", envir = parent.frame(3))$id[1]
colnames(x$EVAPDAY.ASC) <- toupper(colnames(x$EVAPDAY.ASC))
colnames(x$SWATDAY.ASC) <- toupper(colnames(x$SWATDAY.ASC))
colnames(x$FLOWDAY.ASC) <- toupper(colnames(x$FLOWDAY.ASC))
colnames(x$ABOVDAY.ASC) <- toupper(colnames(x$ABOVDAY.ASC))
# Aggregierung: ...
x$swat.profile <- modLWFB90:::Aggregate.SWAT.ASC(SWATi = x$SWATDAY.ASC, soil = soil.df)
if(stringr::str_detect(aggr_tp, "daily")){
output_daily <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
x$ABOVDAY.ASC[,list(YR, MO, DA,
PREC = RFAL+SFAL,
BSTN = RFAL+SFAL-RINT-SINT)],
x$FLOWDAY.ASC[,list(FLOW, SRFL, SLFL, BYFL, DSFL, VRFLN)],
Evap.DailyToDailyAgg(dat = x$EVAPDAY.ASC),
x$swat.profile[,-c(1:4), with=F])
setnames(output_daily, names(output_daily), tolower(names(output_daily)))
colnames(output_daily)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "monthly")){
output_monthly <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToMonthly(dat = x$ABOVDAY.ASC)[,list(YR, MO, PREC, BSTN)],
Flow.DailyToMonthly(dat = x$FLOWDAY.ASC)[,-c(1,2), with=FALSE],
Evap.DailyToMonthly(dat = x$EVAPDAY.ASC)[,-c(1,2), with=FALSE],
SWATProfile.DailyToMonthly(x$swat.profile)[,-c(1,2), with=F])
setnames(output_monthly, names(output_monthly), tolower(names(output_monthly)))
colnames(output_monthly)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "vegper")){
output_vegper <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToVegper(dat = x$ABOVDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy),
Flow.DailyToVegper(dat = x$FLOWDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-c(1:3), with = F],
Evap.DailyToVegper(dat = x$EVAPDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-c(1:3), with = F],
SWATProfile.DailyToVegper(dat = x$swat.profile,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-1, with=F])
setnames(output_vegper, names(output_vegper), tolower(names(output_vegper)))
colnames(output_vegper)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "yearly")){
output_yearly <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToYearly(dat = x$ABOVDAY.ASC),#[,list(YR, PREC, BSTN)],
Flow.DailyToYearly(dat = x$FLOWDAY.ASC)[,-1, with=F],
Evap.DailyToYearly(dat = x$EVAPDAY.ASC)[,-1, with=F],
SWATProfile.DailyToYearly(dat = x$swat.profile)[,-1, with=F])
setnames(output_yearly, names(output_yearly), tolower(names(output_yearly)))
colnames(output_yearly)[c(1, 2)] <- c("ID","ID_custom")
}
# Output-Selection ...
if(!any(is.na(col_select_vp))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "vpstartdoy", "vpenddoy",
col_select_vp)
output_vegper <- output_vegper[, keep, with = FALSE]
}
if(!any(is.na(col_select_mon))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "mo",
col_select_mon)
output_monthly <- output_monthly[, keep, with = FALSE]
}
if(!any(is.na(col_select_yr))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr",
col_select_yr)
output_yearly <- output_yearly[, keep, with = FALSE]
}
if(!any(is.na(col_select_day))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "mo", "da",
col_select_day)
output_daily <- output_daily[, keep, with = FALSE]
}
ls.out <- list()
if(is.na(dir_name)){
if(stringr::str_detect(aggr_tp, "daily")){
ls.out <- append(ls.out, list(output_daily))
names(ls.out)[length(ls.out)] <- "output_daily"
}
if(stringr::str_detect(aggr_tp, "vegper")){
ls.out <- append(ls.out, list(output_vegper))
names(ls.out)[length(ls.out)] <- "output_vegper"
}
if(stringr::str_detect(aggr_tp, "monthly")){
ls.out <- append(ls.out, list(output_monthly))
names(ls.out)[length(ls.out)] <- "output_monthly"
}
if(stringr::str_detect(aggr_tp, "yearly")){
ls.out <- append(ls.out, list(output_yearly))
names(ls.out)[length(ls.out)] <- "output_yearly"
}
return(ls.out)
}else{
# write to tmp
if(stringr::str_detect(aggr_tp, "daily")){
if(!dir.exists(paste0(dir_name, "daily/"))){
dir.create(paste0(dir_name, "daily/"), recursive = T)}
saveRDS(output_daily,
file = paste0(dir_name, "daily/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "yearly")){
if(!dir.exists(paste0(dir_name, "yearly/"))){
dir.create(paste0(dir_name, "yearly/"), recursive = T)}
saveRDS(output_yearly,
file = paste0(dir_name, "yearly/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "monthly")){
if(!dir.exists(paste0(dir_name, "monthly/"))){
dir.create(paste0(dir_name, "monthly/"), recursive = T)}
saveRDS(output_monthly,
file = paste0(dir_name, "monthly/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "vegper")){
if(!dir.exists(paste0(dir_name, "vegper/"))){
dir.create(paste0(dir_name, "vegper/"), recursive = T)}
saveRDS(output_vegper,
file = paste0(dir_name, "vegper/", id_num, ".rds"))
}
}
}
#
# b90.result <- run_LWFB90(options_b90 = options_b90,
# param_b90 = param_b90,
# climate = ls.clim[[1]],
# soil = ls.soil[[1]],
# output = df.output,
# output_fun = fnc_write_agg,
#
# aggr_tp = "daily",
# dir_name = NA)
rhabel/modLWFB90 documentation built on Nov. 21, 2024, 3:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Defines functions fnc_write_agg_depr
Documented in fnc_write_agg_depr
#' Function to aggregate and write data from automated LWFB90-Runs
#'
#' LWFBrook90 creates a lot of output files. In order to keep data storage to a minimum, both \code{\link[LWFBrook90R]{run_LWFB90}} and \code{\link[LWFBrook90R]{run_multisite_LWFB90}} provide an \code{output_fun} - argument that can be used to reduce the output and directly write it to a database. This is what this function is made for. \cr In comparison to \code{\link{fnc_write}}, which only reduces the columns returned by \code{\link[LWFBrook90R]{run_LWFB90}} (see help page), this function enables aggregation over vegperiod and monthly, plus a more detailed selection of drought indices. See detail section.\cr\cr IMPORTANT: FOR RUNNING THIS AGGREGATE FUNCTION, \code{output} in \code{run_multiside_LWFB90} MUST BE SET TO A \code{df.output} AS SET BY THE CODE IN THE EXAMPLE SECTION \cr The function writes .rds files with the desired output for each point. \code{\link{fnc_write_to_sql}} can be used to convert these files into a SQLite-DB. This "step-in-between" is necessary because SQLite does not support parallel writing.
#'
#' @param x one of the intermediate producs of \code{\link[LWFBrook90R]{run_LWFB90}} or \code{\link[LWFBrook90R]{run_multisite_LWFB90}}, which is further processed internally. Can't be adjusted.
#' @param aggr_tp a string containing the desired aggregation time period. Can be \code{daily}, \code{monthly}, \code{vegper}, \code{yearly}, or any combination of the four (i.e. \code{monthly_vegper}). The latter does all terms that are detectable within the string.
#' @param col_select_day a string containing the desired columns from the daily-aggregation (see details)
#' @param col_select_mon a string containing the desired columns from the monthly-aggregation (see details)
#' @param col_select_vp a string containing the desired columns from the vegperiod-aggregation (see details)
#' @param col_select_yr a string containing the desired columns from the yearly-aggregation (see details)
#' @param dir_name directory for tmp files, if \code{NA} as in default, results are returned to console
#'
#' @return Returns the desired output to .rds files
#'
#' @section Output column selection:
#' IT IS HIGHLY RECOMMENDED TO MAKE A SUBSELECTION, OR THERE WILL BE A LOT (>100) OF COLUMNS.
#' For a complete list of possible output types plus description, see \code{"U:/db_brook90_output/whh_db_documentation"}
#'
#' @examples
#' # setting for df.output:
#' df.output <- set_outputLWFB90()
#' df.output[,] <- 0L
#' df.output[c("Abov", "Evap", "Flow", "Swat"), c("Day")] <- 1
#'
#' # for full example, see help page of ?fnc_write_to_sql
#'
#' @import data.table
#' @export
fnc_write_agg_depr <- function(x,
aggr_tp,
col_select_day = NA,
col_select_mon = NA,
col_select_vp = NA,
col_select_yr = NA,
dir_name = NA){
# soil.df <- soil
# colnames(soil.df) <- tolower(colnames(soil.df))
# id_name <- soil$id_custom[1]
# id_num <- soil$id[1]
# param_std <- param_b90
# get
soil.df <- get("soil", envir = parent.frame(3))
param_std <- get("param_b90", envir = parent.frame(3))
id_name <- get("soil", envir = parent.frame(3))$id_custom[1]
id_num <- get("soil", envir = parent.frame(3))$id[1]
colnames(x$EVAPDAY.ASC) <- toupper(colnames(x$EVAPDAY.ASC))
colnames(x$SWATDAY.ASC) <- toupper(colnames(x$SWATDAY.ASC))
colnames(x$FLOWDAY.ASC) <- toupper(colnames(x$FLOWDAY.ASC))
colnames(x$ABOVDAY.ASC) <- toupper(colnames(x$ABOVDAY.ASC))
# Aggregierung: ...
x$swat.profile <- modLWFB90:::Aggregate.SWAT.ASC(SWATi = x$SWATDAY.ASC, soil = soil.df)
if(stringr::str_detect(aggr_tp, "daily")){
output_daily <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
x$ABOVDAY.ASC[,list(YR, MO, DA,
PREC = RFAL+SFAL,
BSTN = RFAL+SFAL-RINT-SINT)],
x$FLOWDAY.ASC[,list(FLOW, SRFL, SLFL, BYFL, DSFL, VRFLN)],
Evap.DailyToDailyAgg(dat = x$EVAPDAY.ASC),
x$swat.profile[,-c(1:4), with=F])
setnames(output_daily, names(output_daily), tolower(names(output_daily)))
colnames(output_daily)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "monthly")){
output_monthly <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToMonthly(dat = x$ABOVDAY.ASC)[,list(YR, MO, PREC, BSTN)],
Flow.DailyToMonthly(dat = x$FLOWDAY.ASC)[,-c(1,2), with=FALSE],
Evap.DailyToMonthly(dat = x$EVAPDAY.ASC)[,-c(1,2), with=FALSE],
SWATProfile.DailyToMonthly(x$swat.profile)[,-c(1,2), with=F])
setnames(output_monthly, names(output_monthly), tolower(names(output_monthly)))
colnames(output_monthly)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "vegper")){
output_vegper <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToVegper(dat = x$ABOVDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy),
Flow.DailyToVegper(dat = x$FLOWDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-c(1:3), with = F],
Evap.DailyToVegper(dat = x$EVAPDAY.ASC,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-c(1:3), with = F],
SWATProfile.DailyToVegper(dat = x$swat.profile,
vp.year = min(x$FLOWDAY.ASC$YR):max(x$FLOWDAY.ASC$YR),
vp.start = param_std$budburstdoy,
vp.end = param_std$leaffalldoy)[,-1, with=F])
setnames(output_vegper, names(output_vegper), tolower(names(output_vegper)))
colnames(output_vegper)[c(1, 2)] <- c("ID","ID_custom")
}
if(stringr::str_detect(aggr_tp, "yearly")){
output_yearly <- data.table(ID = id_num,
ID_custom = id_name,
coords_x = param_std$coords_x,
coords_y = param_std$coords_y,
Prec.DailyToYearly(dat = x$ABOVDAY.ASC),#[,list(YR, PREC, BSTN)],
Flow.DailyToYearly(dat = x$FLOWDAY.ASC)[,-1, with=F],
Evap.DailyToYearly(dat = x$EVAPDAY.ASC)[,-1, with=F],
SWATProfile.DailyToYearly(dat = x$swat.profile)[,-1, with=F])
setnames(output_yearly, names(output_yearly), tolower(names(output_yearly)))
colnames(output_yearly)[c(1, 2)] <- c("ID","ID_custom")
}
# Output-Selection ...
if(!any(is.na(col_select_vp))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "vpstartdoy", "vpenddoy",
col_select_vp)
output_vegper <- output_vegper[, keep, with = FALSE]
}
if(!any(is.na(col_select_mon))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "mo",
col_select_mon)
output_monthly <- output_monthly[, keep, with = FALSE]
}
if(!any(is.na(col_select_yr))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr",
col_select_yr)
output_yearly <- output_yearly[, keep, with = FALSE]
}
if(!any(is.na(col_select_day))){
keep <- c("ID", "ID_custom", "coords_x", "coords_y", "yr", "mo", "da",
col_select_day)
output_daily <- output_daily[, keep, with = FALSE]
}
ls.out <- list()
if(is.na(dir_name)){
if(stringr::str_detect(aggr_tp, "daily")){
ls.out <- append(ls.out, list(output_daily))
names(ls.out)[length(ls.out)] <- "output_daily"
}
if(stringr::str_detect(aggr_tp, "vegper")){
ls.out <- append(ls.out, list(output_vegper))
names(ls.out)[length(ls.out)] <- "output_vegper"
}
if(stringr::str_detect(aggr_tp, "monthly")){
ls.out <- append(ls.out, list(output_monthly))
names(ls.out)[length(ls.out)] <- "output_monthly"
}
if(stringr::str_detect(aggr_tp, "yearly")){
ls.out <- append(ls.out, list(output_yearly))
names(ls.out)[length(ls.out)] <- "output_yearly"
}
return(ls.out)
}else{
# write to tmp
if(stringr::str_detect(aggr_tp, "daily")){
if(!dir.exists(paste0(dir_name, "daily/"))){
dir.create(paste0(dir_name, "daily/"), recursive = T)}
saveRDS(output_daily,
file = paste0(dir_name, "daily/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "yearly")){
if(!dir.exists(paste0(dir_name, "yearly/"))){
dir.create(paste0(dir_name, "yearly/"), recursive = T)}
saveRDS(output_yearly,
file = paste0(dir_name, "yearly/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "monthly")){
if(!dir.exists(paste0(dir_name, "monthly/"))){
dir.create(paste0(dir_name, "monthly/"), recursive = T)}
saveRDS(output_monthly,
file = paste0(dir_name, "monthly/", id_num, ".rds"))
}
if(stringr::str_detect(aggr_tp, "vegper")){
if(!dir.exists(paste0(dir_name, "vegper/"))){
dir.create(paste0(dir_name, "vegper/"), recursive = T)}
saveRDS(output_vegper,
file = paste0(dir_name, "vegper/", id_num, ".rds"))
}
}
}
#
# b90.result <- run_LWFB90(options_b90 = options_b90,
# param_b90 = param_b90,
# climate = ls.clim[[1]],
# soil = ls.soil[[1]],
# output = df.output,
# output_fun = fnc_write_agg,
#
# aggr_tp = "daily",
# dir_name = NA)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.