rohan-shah/mpMap2
Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Package index
Search the rohan-shah/mpMap2 package
Vignettes
Functions
344
Source code
209
Man pages
102
Home
/
GitHub
/
rohan-shah/mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines
/
API

API for rohan-shah/mpMap2
Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Global functions
+,geneticData,assignFounderPattern-method Man page
+,geneticData,assignFounderPatternPrototype-method Man page
+,geneticData,biparentalDominant-method Man page
+,geneticData,fixedNumberOfFounderAlleles-method Man page
+,geneticData,multiparentSNP-method Man page
+,geneticData,multiparentSNPPrototype-method Man page
+,geneticData,normalPhenotype-method Man page
+,mpcross,assignFounderPattern-method Man page
+,mpcross,assignFounderPatternPrototype-method Man page
+,mpcross,biparentalDominant-method Man page
+,mpcross,fixedNumberOfFounderAlleles-method Man page
+,mpcross,mpcross-method Man page
+,mpcross,multiparentSNP-method Man page
+,mpcross,multiparentSNPPrototype-method Man page
+,mpcross,normalPhenotype-method Man page
+,mpcross,removeHets-method Man page
+,mpcrossMapped,assignFounderPattern-method Man page
+,mpcrossMapped,assignFounderPatternPrototype-method Man page
+,mpcrossMapped,mpcrossMapped-method Man page
+,mpcrossRF,mpcross-method Man page
+,mpcrossRF,mpcrossRF-method Man page
.geneticData Man page
.mpcross Man page
.mpcrossMapped Man page
.mpcrossRF Man page
.pedigreeGraph Man page
.probabilities Man page
.rcpp_collect_warnings Source code
.rcpp_error_recorder Source code
.rcpp_warning_recorder Source code
[,rawSymmetricMatrix,index,index,logical-method Man page
[,rawSymmetricMatrix,index,index,missing-method Man page
[,rawSymmetricMatrix,matrix,missing,missing-method Man page
[,rawSymmetricMatrix,missing,missing,missing-method Man page
addExtraMarkerFromRawCall Man page Source code
addExtraMarkers Man page Source code
as.mpInterval Man page Source code
as.mpInterval.mpInterval Source code
as.mpInterval.mpMarker Source code
assignFounderPattern Man page Source code
assignFounderPatternPrototype Source code
assignFounderPatternPrototypeInternal Source code
backcrossPedigree Man page Source code
biparentalDominant Man page Source code
callFromMap Man page Source code
callFromMapInternal Source code
changeMarkerPosition Man page Source code
checkCompatibleGeneticData Source code
checkDetailedPedigree Source code
checkGeneticData Source code
checkGeneticDataList Source code
checkHets Source code
checkImputedData Source code
checkLG Source code
checkMap Source code
checkMpcross Source code
checkMpcrossLG Source code
checkMpcrossMapped Source code
checkMpcrossRF Source code
checkPedigree Source code
checkPedigreeGraph Source code
checkProbabilities Source code
checkRF Source code
checkRawSymmetricMatrix Source code
clusterOrderCross Man page Source code
combineGenotypes Source code
combineKeepRF Man page Source code
compressedProbabilities Source code
computeAllEpistaticChiSquared Man page Source code
computeGenotypeProbabilities Man page Source code
computeGenotypeProbabilitiesInternal Source code
condition Source code
createSNPTemplate Source code
designMat Source code
detailedPedigree Man page Source code
detailedPedigree-class Man page
eightParentPedigreeImproperFunnels Man page Source code
eightParentPedigreeImproperFunnelsPrototype Source code
eightParentPedigreeRandomFunnels Man page Source code
eightParentPedigreeRandomFunnelsPrototype Source code
eightParentPedigreeSingleFunnel Man page Source code
eightParentPedigreeSingleFunnelPrototype Source code
eightParentSubsetMap Man page
estimateMap Man page Source code
estimateMapFromImputation Man page Source code
estimateMapInternal Source code
estimateRF Man page Source code
estimateRFInternal Source code
estimateRFSingleDesign Man page Source code
estimateRFSingleDesignInternal Source code
existingLocalisationStatistics Man page
expand Man page Source code
expandedProbabilitiesFinite Source code
expandedProbabilitiesInfinite Source code
exportMapToPretzl Man page Source code
extraImputationPoints Man page Source code
f2Pedigree Man page Source code
finalNames Man page
finalNames,geneticData-method Man page
finalNames,mpcross-method Man page
finals Man page
finals,geneticData-method Man page
finals,mpcross-method Man page
fixedNumberOfFounderAlleles Man page Source code
flatImputationMapNames Man page
flatImputationMapNames,geneticData-method Man page
flatImputationMapNames,imputed-method Man page
flatImputationMapNames,mpcrossMapped-method Man page
formGroups Man page Source code
founderNames Man page
founderNames,geneticData-method Man page
founderNames,mpcross-method Man page
founders Man page
founders,geneticData-method Man page
founders,mpcross-method Man page
fourParentPedigreeRandomFunnels Man page Source code
fourParentPedigreeRandomFunnelsPrototype Source code
fourParentPedigreeSingleFunnel Man page Source code
fourParentPedigreeSingleFunnelPrototype Source code
fromMpMap Man page Source code
fullHetData Source code
generateGridPositions Man page Source code
generateIntervalMidPoints Man page Source code
geneticData-class Man page
getAllFunnels Man page Source code
getAllFunnelsIncAIC Man page Source code
getChromosomes Man page Source code
getIntercrossingAndSelfingGenerations Man page Source code
getPositions Man page Source code
haldane Man page
haldaneToRf Man page Source code
hetData Man page
hetData,geneticData-method Man page
hetData,mpcross-method Man page
hetsForSNPMarkers Man page Source code
imputationData Man page
imputationData,geneticData-method Man page
imputationData,imputed-method Man page
imputationData,mpcrossMapped-method Man page
imputationKey Man page
imputationKey,geneticData-method Man page
imputationKey,imputed-method Man page
imputationKey,mpcrossMapped-method Man page
imputationMap Man page
imputationMap,geneticData-method Man page
imputationMap,imputed-method Man page
imputationMap,mpcrossMapped-method Man page
impute Man page Source code
imputeFounders Man page Source code
infiniteSelfing Man page Source code
inheritsNewMpcrossArgument Source code
initialize,canSkipValidity-method Man page
initialize,geneticDataList-method Man page
isDetailedPedigreeArgument Source code
isHetDataArgument Source code
isIntegerMatrixArgument Source code
isMapArgument Source code
isMpMapPedigreeArgument Source code
isNewMpcrossLGArgument Source code
isNewMpcrossMappedArgument Source code
isNewMpcrossRFArgument Source code
isNumericMatrixArgument Source code
isNumericVectorListArgument Source code
isOldMpMapMpcrossArgument Source code
isPedigreeArgument Source code
jitterMap Man page Source code
kosambi Man page
kosambiToRf Man page Source code
lineNames Man page
lineNames,geneticData-method Man page
lineNames,mpcross-method Man page
lineNames,pedigree-method Man page
lineNames<- Man page
lineNames<-,detailedPedigree-method Man page
lineNames<-,pedigree-method Man page
linesByNames Man page Source code
listCodingErrors Man page Source code
listCodingErrorsInfiniteSelfing Man page Source code
mapFunctions Man page
markers Man page
markers,geneticData-method Man page
markers,hetData-method Man page
markers,lg-method Man page
markers,mpcross-method Man page
markers,rf-method Man page
mpcross Man page Source code
mpcross-class Man page
mpcrossMapped Man page Source code
mpcrossMapped-class Man page
mpcrossRF-class Man page
multiparentSNP Man page Source code
multiparentSNPKeepHets Source code
multiparentSNPPrototype Source code
multiparentSNPPrototypeKeepHets Source code
multiparentSNPPrototypeRemoveHets Source code
multiparentSNPRemoveHets Source code
nFounders Man page
nFounders,detailedPedigree-method Man page
nFounders,geneticData-method Man page
nFounders,mpcross-method Man page
nFounders,pedigree-method Man page
nLines Man page
nLines,geneticData-method Man page
nLines,mpcross-method Man page
nMarkers Man page
nMarkers,geneticData-method Man page
nMarkers,mpcross-method Man page
nonNegativeIntegerArgument Source code
normalPhenotype Man page Source code
omp_get_num_threads Man page Source code
omp_set_num_threads Man page Source code
orderCross Man page Source code
pedigree Man page Source code
pedigree-class Man page
pedigreeGraph-class Man page
pedigreeToGraph Man page Source code
plot,addExtraMarkersStatistics,ANY-method Man page
plot,geneticData,ANY-method Man page
plot,imputed,ANY-method Man page
plot,mpcross,ANY-method Man page
plot,pedigreeGraph,ANY-method Man page
plot,probabilities,ANY-method Man page
plotMosaic Man page Source code
plotProbabilities Man page Source code
positiveIntegerArgument Source code
print.mpcross Source code
print.mpcrossLG Source code
print.mpcrossRF Source code
probabilities-class Man page
probabilityData Man page
probabilityData,geneticData-method Man page
probabilityData,mpcrossMapped-method Man page
purdyToPedigree Source code
redact Man page
redact,geneticData-method Man page
redact,mpcross-method Man page
redact,mpcrossLG-method Man page
redact,mpcrossMapped-method Man page
redact,mpcrossRF-method Man page
removeHets Man page Source code
reorderPedigree Source code
reverseChromosomes Man page Source code
rfToHaldane Man page Source code
rfToKosambi Man page Source code
rilPedigree Man page Source code
selfing Man page
selfing,pedigree-method Man page
selfing<- Man page
selfing<-,detailedPedigree-method Man page
selfing<-,pedigree-method Man page
simulateMPCross Man page Source code
simulatedFourParentData Man page
simulatedFourParentMap Man page
singleLocusProbabilities Source code
sixteenParentPedigreeRandomFunnels Man page Source code
sixteenParentPedigreeRandomFunnelsPrototype Source code
splitVector Source code Source code
stripPedigree Man page Source code
subset,geneticData-method Man page
subset,hetData-method Man page
subset,imputed-method Man page
subset,lg-method Man page
subset,mpcross-method Man page
subset,mpcrossLG-method Man page
subset,mpcrossMapped-method Man page
subset,mpcrossRF-method Man page
subset,probabilities-method Man page
subset,rawSymmetricMatrix-method Man page
subset,rf-method Man page
testDistortion Man page Source code
toMpMap Man page Source code
transposeProbabilities Man page Source code
twoParentPedigree Man page Source code
wsnp_Ku_rep_c103074_89904851 Man page
rohan-shah/mpMap2 documentation built on July 21, 2020, 8:58 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close