get_interaction_resources: Retrieve a list of interaction resources available in...

In saezlab/OmnipathR: OmniPath web service client and more

Retrieve a list of interaction resources available in Omnipath

Description

Gets the names of the resources from https://omnipath.org/interactions.

Usage

get_interaction_resources(dataset = NULL)

Arguments

dataset

a dataset within the interactions query type. Currently available datasets are 'omnipath', 'kinaseextra', 'pathwayextra', 'ligrecextra', 'dorothea', 'tf_target', 'tf_mirna', 'mirnatarget' and 'lncrna_mrna'

Value

character vector with the names of the interaction databases

See Also

• get_resources

• import_all_interactions

• import_omnipath_interactions

• import_pathwayextra_interactions

• import_kinaseextra_interactions

• import_ligrecextra_interactions

• import_mirnatarget_interactions

• import_dorothea_interactions

Examples

get_interaction_resources()

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.