get_resources: Retrieve the available resources for a given query type

In saezlab/OmnipathR: OmniPath web service client and more

Retrieve the available resources for a given query type

Description

Collects the names of the resources available in OmniPath for a certain query type and optionally for a dataset within that.

Usage

get_resources(query_type, datasets = NULL, generic_categories = NULL)

Arguments

query_type	one of the query types 'interactions', 'enz_sub', 'complexes', 'annotations' or 'intercell'
datasets	currently within the 'interactions' query type only, multiple datasets are available: 'omnipath', 'kinaseextra', 'pathwayextra', 'ligrecextra', 'dorothea', 'tf_target', 'tf_mirna', 'mirnatarget' and 'lncrna_mrna'.
generic_categories	for the 'intercell' query type, restrict the search for some generic categories e.g. 'ligand' or 'receptor'.

Value

a character vector with resource names

Examples

get_resources(query_type = 'interactions')

saezlab/OmnipathR documentation built on April 17, 2024, 9:39 p.m.