hmdb_id_mapping_table: Identifier translation table from HMDB

In saezlab/OmnipathR: OmniPath web service client and more

Identifier translation table from HMDB

Description

Identifier translation table from HMDB

Usage

hmdb_id_mapping_table(to, from, entity_type = "metabolite")

Arguments

to	Character or symbol: target ID type. See Details for possible values.
from	Character or symbol: source ID type. See Details for possible values.
entity_type	Character: "gene" and "smol" are short symbols for proteins, genes and small molecules respectively. Several other synonyms are also accepted.

Details

The arguments to and from can be provided either as character or as symbol (NSE). Their possible values are either HMDB XML tag names or synonyms listed at id_types.

Value

A data frame (tibble) with columns 'From' and 'To'.

See Also

• translate_ids

• id_types

• hmdb_table

• uniprot_full_id_mapping_table

• uniprot_id_mapping_table

• ensembl_id_mapping_table

• chalmers_gem_id_mapping_table

Examples

hmdb_kegg <- hmdb_id_mapping_table("kegg", "hmdb")
hmdb_kegg

saezlab/OmnipathR documentation built on July 13, 2024, 6:18 p.m.