hmdb_id_mapping_table | R Documentation |
Identifier translation table from HMDB
hmdb_id_mapping_table(to, from, entity_type = "metabolite")
to |
Character or symbol: target ID type. See Details for possible values. |
from |
Character or symbol: source ID type. See Details for possible values. |
entity_type |
Character: "gene" and "smol" are short symbols for proteins, genes and small molecules respectively. Several other synonyms are also accepted. |
The arguments to
and from
can be provided either
as character or as symbol (NSE). Their possible values are either HMDB XML
tag names or synonyms listed at id_types
.
A data frame (tibble) with columns 'From' and 'To'.
translate_ids
id_types
hmdb_table
uniprot_full_id_mapping_table
uniprot_id_mapping_table
ensembl_id_mapping_table
chalmers_gem_id_mapping_table
hmdb_kegg <- hmdb_id_mapping_table("kegg", "hmdb")
hmdb_kegg
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