homologene_organisms: Organisms in NCBI HomoloGene

In saezlab/OmnipathR: OmniPath web service client and more

Organisms in NCBI HomoloGene

Description

Organisms in NCBI HomoloGene

Usage

homologene_organisms(name_type = "ncbi")

Arguments

name_type

Character: type of the returned name or identifier. Many synonyms are accepted, the shortest ones: "latin", "ncbi", "common", "ensembl". Case unsensitive.

Details

Not all NCBI Taxonomy IDs can be translated to common or latin names. It means some organisms will be missing if translated to those name types. In the future we will address this issue, until then if you want to see all organisms use NCBI Taxonomy IDs.

Value

A character vector of organism names.

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.