htridb_download: Downloads TF-target interactions from HTRIdb

In saezlab/OmnipathR: OmniPath web service client and more

Downloads TF-target interactions from HTRIdb

Description

HTRIdb (https://www.lbbc.ibb.unesp.br/htri/) is a database of literature curated human TF-target interactions. As the database is recently offline, the data is distributed by the OmniPath rescued data repository (https://rescued.omnipathdb.org/).

Usage

htridb_download()

Value

Data frame (tibble) with interactions.

Examples

htridb_data <- htridb_download()
htridb_data
# # A tibble: 18,630 x 7
#      OID GENEID_TF SYMBOL_TF GENEID_TG SYMBOL_TG TECHNIQUE
#    <dbl>     <dbl> <chr>         <dbl> <chr>     <chr>
#  1 32399       142 PARP1           675 BRCA2     Electrophoretic Mobi.
#  2 32399       142 PARP1           675 BRCA2     Chromatin Immunoprec.
#  3 28907       196 AHR            1543 CYP1A1    Chromatin Immunoprec.
#  4 29466       196 AHR            1543 CYP1A1    Electrophoretic Mobi.
#  5 28911       196 AHR            1543 CYP1A1    Chromatin Immunoprec.
# # . with 18,620 more rows, and 1 more variable: PUBMED_ID <chr>

saezlab/OmnipathR documentation built on April 17, 2024, 9:39 p.m.