inbiomap_download: Downloads and preprocesses network data from InWeb InBioMap

In saezlab/OmnipathR: OmniPath web service client and more

Downloads and preprocesses network data from InWeb InBioMap

Description

Downloads the data by inbiomap_raw, extracts the UniProt IDs, Gene Symbols and scores and removes the irrelevant columns.

Usage

inbiomap_download(...)

Arguments

...	Passed to inbiomap_raw.

Value

A data frame (tibble) of interactions.

See Also

inbiomap_raw

Examples

## Not run: 
inbiomap_interactions <- inbiomap_download()
inbiomap_interactions

## End(Not run)
# # A tibble: 625,641 x 7
#    uniprot_a uniprot_b genesymbol_a genesymbol_b inferred score1 score2
#    <chr>     <chr>     <chr>        <chr>        <lgl>     <dbl>  <dbl>
#  1 A0A5B9    P01892    TRBC2        HLA-A        FALSE     0.417 0.458
#  2 A0AUZ9    Q96CV9    KANSL1L      OPTN         FALSE     0.155 0.0761
#  3 A0AV02    P24941    SLC12A8      CDK2         TRUE      0.156 0.0783
#  4 A0AV02    Q00526    SLC12A8      CDK3         TRUE      0.157 0.0821
#  5 A0AV96    P0CG48    RBM47        UBC          FALSE     0.144 0.0494
# # . with 625,631 more rows

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.