interaction_graph: Build Omnipath interaction graph

In saezlab/OmnipathR: OmniPath web service client and more

Build Omnipath interaction graph

Description

Transforms the interactions data frame to an igraph graph object.

Usage

interaction_graph(interactions = interactions)

Arguments

interactions

data.frame created by import_omnipath_enzsub import_omnipath_interactions import_pathwayextra_interactions import_kinaseextra_interactions import_ligrecextra_interactions import_post_translational_interactions import_dorothea_interactions import_tf_target_interactions import_transcriptional_interactions import_mirnatarget_interactions import_all_interactions

Value

An igraph graph object.

See Also

• graph_interaction

• import_omnipath_interactions

• import_pathwayextra_interactions

• import_kinaseextra_interactions

• import_ligrecextra_interactions

• import_dorothea_interactions

• import_mirnatarget_interactions

• import_all_interactions

• giant_component

• find_all_paths

Examples

interactions <- import_omnipath_interactions(resources = c('SignaLink3'))
g <- interaction_graph(interactions)

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.