interaction_resources: Interaction resources available in Omnipath

interaction_resourcesR Documentation

Interaction resources available in Omnipath

Description

Names of the resources available in https://omnipathdb.org/interactions.

Usage

interaction_resources(dataset = NULL)

Arguments

dataset

a dataset within the interactions query type. Currently available datasets are 'omnipath', 'kinaseextra', 'pathwayextra', 'ligrecextra', 'collectri', 'dorothea', 'tf_target', 'tf_mirna', 'mirnatarget', 'lncrna_mrna' and 'small_molecule_protein'.

Value

Character: names of the interaction resources.

See Also

  • resources

  • omnipath

  • pathwayextra

  • kinaseextra

  • ligrecextra

  • post_translational

  • dorothea

  • collectri

  • tf_target

  • transcriptional

  • mirna_target

  • tf_mirna

  • small_molecule

  • all_interactions

Examples

interaction_resources()


saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.