interaction_resources: Interaction resources available in Omnipath

In saezlab/OmnipathR: OmniPath web service client and more

Interaction resources available in Omnipath

Description

Names of the resources available in https://omnipathdb.org/interactions.

Usage

interaction_resources(dataset = NULL)

Arguments

dataset

a dataset within the interactions query type. Currently available datasets are 'omnipath', 'kinaseextra', 'pathwayextra', 'ligrecextra', 'collectri', 'dorothea', 'tf_target', 'tf_mirna', 'mirnatarget', 'lncrna_mrna' and 'small_molecule_protein'.

Value

Character: names of the interaction resources.

See Also

• resources

• omnipath

• pathwayextra

• kinaseextra

• ligrecextra

• post_translational

• dorothea

• collectri

• tf_target

• transcriptional

• mirna_target

• tf_mirna

• small_molecule

• all_interactions

Examples

interaction_resources()

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.