kegg_pathway_annotations: Protein pathway annotations

In saezlab/OmnipathR: OmniPath web service client and more

Protein pathway annotations

Description

Downloads all KEGG pathways and creates a table of protein-pathway annotations.

Usage

kegg_pathway_annotations(pathways = NULL)

Arguments

pathways

A table of KEGG pathways as produced by kegg_pathways_download.

Value

A data frame (tibble) with UniProt IDs and pathway names.

See Also

kegg_pathways_download

Examples

## Not run: 
kegg_pw_annot <- kegg_pathway_annotations()
kegg_pw_annot
# # A tibble: 7,341 x 4
#    uniprot genesymbol pathway                pathway_id
#    <chr>   <chr>      <chr>                  <chr>
#  1 Q03113  GNA12      MAPK signaling pathway hsa04010
#  2 Q9Y4G8  RAPGEF2    MAPK signaling pathway hsa04010
#  3 Q13972  RASGRF1    MAPK signaling pathway hsa04010
#  4 O95267  RASGRP1    MAPK signaling pathway hsa04010
#  5 P62834  RAP1A      MAPK signaling pathway hsa04010
# # . with 7,336 more rows

## End(Not run)

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.