nichenet_build_model: Construct a NicheNet ligand-target model

In saezlab/OmnipathR: OmniPath web service client and more

Construct a NicheNet ligand-target model

Description

Construct a NicheNet ligand-target model

Usage

nichenet_build_model(optimization_results, networks, use_weights = TRUE)

Arguments

optimization_results	The outcome of NicheNet parameter optimization as produced by nichenet_optimization.
networks	A list with NicheNet format signaling, ligand-receptor and gene regulatory networks as produced by nichenet_networks.
use_weights	Logical: whether to use the optimized weights.

Value

A named list with two elements: 'weighted_networks' and 'optimized_parameters'.

Examples

## Not run: 
expression <- nichenet_expression_data()
networks <- nichenet_networks()
optimization_results <- nichenet_optimization(networks, expression)
nichenet_model <- nichenet_build_model(optimization_results, networks)

## End(Not run)

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.