nichenet_gr_network_pathwaycommons: NicheNet gene regulatory network from PathwayCommons

In saezlab/OmnipathR: OmniPath web service client and more

NicheNet gene regulatory network from PathwayCommons

Description

Builds gene regulation prior knowledge for NicheNet using PathwayCommons.

Usage

nichenet_gr_network_pathwaycommons(
  interaction_types = "controls-expression-of",
  ...
)

Arguments

interaction_types	Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage.
...	Ignored.

Value

Data frame with gene regulatory interactions in NicheNet format.

See Also

• nichenet_gr_network

• pathwaycommons_download

Examples

pc_gr_network <- nichenet_gr_network_pathwaycommons()

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.