nichenet_gr_network_pathwaycommons: NicheNet gene regulatory network from PathwayCommons
In saezlab/OmnipathR: OmniPath web service client and more
nichenet_gr_network_pathwaycommons R Documentation
NicheNet gene regulatory network from PathwayCommons
Description
Builds gene regulation prior knowledge for NicheNet using PathwayCommons.
Usage
nichenet_gr_network_pathwaycommons(
interaction_types = "controls-expression-of",
...
)
Arguments
interaction_types
Character vector with PathwayCommons interaction
types. Please refer to the default value and the PathwayCommons
webpage.
...
Ignored.
Value
Data frame with gene regulatory interactions in NicheNet format.
See Also
nichenet_gr_network
pathwaycommons_download
Examples
pc_gr_network <- nichenet_gr_network_pathwaycommons()
saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.
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| nichenet_gr_network_pathwaycommons | R Documentation |
NicheNet gene regulatory network from PathwayCommons
Description
Builds gene regulation prior knowledge for NicheNet using PathwayCommons.
Usage
nichenet_gr_network_pathwaycommons(
interaction_types = "controls-expression-of",
...
)
Arguments
interaction_types |
Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage. |
... |
Ignored. |
Value
Data frame with gene regulatory interactions in NicheNet format.
See Also
nichenet_gr_networkpathwaycommons_download
Examples
pc_gr_network <- nichenet_gr_network_pathwaycommons()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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