nichenet_signaling_network_evex: NicheNet signaling network from EVEX

In saezlab/OmnipathR: OmniPath web service client and more

NicheNet signaling network from EVEX

Description

Builds signaling network prior knowledge for NicheNet from the EVEX database.

Usage

nichenet_signaling_network_evex(top_confidence = 0.75, indirect = FALSE, ...)

Arguments

top_confidence	Double, between 0 and 1. Threshold based on the quantile of the confidence score.
indirect	Logical: whether to include indirect interactions.
...	Ignored.

Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

See Also

• evex_download

• nichenet_signaling_network

Examples

ev_signaling_network <- nichenet_signaling_network_evex(
    top_confidence = .9
)

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.