nichenet_signaling_network_harmonizome: NicheNet signaling network from Harmonizome

In saezlab/OmnipathR: OmniPath web service client and more

NicheNet signaling network from Harmonizome

Description

Builds signaling network prior knowledge for NicheNet using Harmonizome

Usage

nichenet_signaling_network_harmonizome(
  datasets = c("phosphositeplus", "kea", "depod"),
  ...
)

Arguments

datasets	The datasets to use. For possible values please refer to default value and the Harmonizome webpage.
...	Ignored.

Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

Examples

# use only KEA and PhosphoSite:
hz_signaling_network <- nichenet_signaling_network_harmonizome(
    datasets = c('kea', 'phosphositeplus')
)

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.