omnipath_show_db: Built in database definitions

In saezlab/OmnipathR: OmniPath web service client and more

Built in database definitions

Description

Databases are resources which might be costly to load but can be used many times by functions which usually automatically load and retrieve them from the database manager. Each database has a lifetime and will be unloaded automatically upon expiry.

Usage

omnipath_show_db()

Value

A data frame with the built in database definitions.

Examples

database_definitions <- omnipath_show_db()
database_definitions
# # A tibble: 14 x 10
#    name       last_used           lifetime package  loader    loader_p.
#    <chr>      <dttm>                 <dbl> <chr>    <chr>     <list>
#  1 Gene Onto. 2021-04-04 20:19:15      300 Omnipat. go_ontol. <named l.
#  2 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  3 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  4 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
#  5 Gene Onto. NA                       300 Omnipat. go_ontol. <named l.
# ... (truncated)
# # . with 4 more variables: latest_param <list>, loaded <lgl>, db <list>,
# #   key <chr>

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.