print_bma_motif_es: Prints BMA motifs to the screen from a sequence of edges

In saezlab/OmnipathR: OmniPath web service client and more

Prints BMA motifs to the screen from a sequence of edges

Description

The motifs can be copy-pasted into a BMA canvas.

Usage

print_bma_motif_es(edge_seq, G, granularity = 2)

Arguments

edge_seq	An igraph edge sequence.
G	An igraph graph object.
granularity	Numeric: granularity value.

Value

Returns 'NULL'.

Examples

interactions <- import_omnipath_interactions(resources = 'ARN')
graph <- interaction_graph(interactions)
print_bma_motif_es(igraph::E(graph)[1], graph)
# {"Model": {
#     "Name": "Omnipath motif",
#     "Variables":[{
#         "Name":"ULK1",
#         "Id":1,
#         "RangeFrom":0,
#         "RangeTo":2,
#         "Formula":""
#     },
#     {
#         "Name":"ATG13",
#         ...
#     }],
# ... (truncated)
# }}

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.