print_path_vs: Print networks paths given by node sequence

In saezlab/OmnipathR: OmniPath web service client and more

Print networks paths given by node sequence

Description

Prints the interactions in the path in a nice format.

Usage

print_path_vs(nodes, G)

Arguments

nodes	An igraph node sequence object.
G	An igraph graph object (from ptms or interactions)

Value

Returns 'NULL'.

See Also

print_path_es

Examples

interactions <- omnipath(resources = "SignaLink3")
OPI_g <- interaction_graph(interactions = interactions)
print_path_vs(
    igraph::all_shortest_paths(
        OPI_g,
        from = 'TYRO3',
        to = 'STAT3'
    )$vpath,
    OPI_g
)
enzsub <- enzyme_substrate(resources=c("PhosphoSite", "SIGNOR"))
enzsub_g <- enzsub_graph(enzsub)
print_path_vs(
    igraph::all_shortest_paths(
        enzsub_g,
        from = 'SRC',
        to = 'STAT1'
    )$res,
    enzsub_g
)

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.