regnetwork_directions: Transcription factor effects from RegNetwork

In saezlab/OmnipathR: OmniPath web service client and more

Transcription factor effects from RegNetwork

Description

Transcription factor effects from RegNetwork

Usage

regnetwork_directions(organism = "human")

Arguments

organism

Character: either human or mouse.

Value

A data frame (tibble) of TF-target interactions with effect signs.

Examples

regn_dir <- regnetwork_directions()
regn_dir
# # A tibble: 3,954 x 5
#    source_genesymb. source_entrez target_genesymb. target_entrez
#    <chr>            <chr>         <chr>            <chr>
#  1 AHR              196           CDKN1B           1027
#  2 APLNR            187           PIK3C3           5289
#  3 APLNR            187           PIK3R4           30849
#  4 AR               367           KLK3             354
#  5 ARNT             405           ALDOA            226
# # . with 3,944 more rows, and 1 more variable: effect <dbl>

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.