relations_table_to_graph: Graph from a table of ontology relations
In saezlab/OmnipathR: OmniPath web service client and more
relations_table_to_graph R Documentation
Graph from a table of ontology relations
Description
Graph from a table of ontology relations
Usage
relations_table_to_graph(relations)
Arguments
relations
A data frame of ontology relations (the "relations"
element of the list returned by obo_parser in case
its argument 'tables' is TRUE).
Details
By default the relations point from child to parents, the edges in the
graph will be of the same direction. Use swap_relations
on the data frame to reverse the direction.
Value
The relations converted to an igraph graph object.
Examples
## Not run:
go <- get_db('go_basic')
go_graph <- relations_table_to_graph(go$relations)
## End(Not run)
saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.
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| relations_table_to_graph | R Documentation |
Graph from a table of ontology relations
Description
Graph from a table of ontology relations
Usage
relations_table_to_graph(relations)
Arguments
relations |
A data frame of ontology relations (the "relations"
element of the list returned by |
Details
By default the relations point from child to parents, the edges in the
graph will be of the same direction. Use swap_relations
on the data frame to reverse the direction.
Value
The relations converted to an igraph graph object.
Examples
## Not run:
go <- get_db('go_basic')
go_graph <- relations_table_to_graph(go$relations)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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