simplify_intercell_network: Simplify an intercell network

In saezlab/OmnipathR: OmniPath web service client and more

Simplify an intercell network

Description

The intercellular communication network data frames, created by intercell_network, are combinations of a network data frame with two copies of the intercell annotation data frames, all of them already having quite some columns. Here we keep only the names of the interacting pair, their intercellular communication roles, and the minimal information of the origin of both the interaction and the annotations. Optionally further columns can be selected.

Usage

simplify_intercell_network(network, ...)

Arguments

network	An intercell network data frame, as provided by intercell_network.
...	Optional, further columns to select.

Value

An intercell network data frame with some columns removed.

See Also

• intercell_network

• filter_intercell_network

• unique_intercell_network

• intercell

• intercell_categories

• intercell_generic_categories

• intercell_summary

Examples

icn <- intercell_network()
icn_s <- simplify_intercell_network(icn)

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.