tfcensus_download: Downloads the list of transcription factors from TF census

In saezlab/OmnipathR: OmniPath web service client and more

Downloads the list of transcription factors from TF census

Description

Vaquerizas et al. published in 2009 a list of transcription factors. This function retrieves Supplementary Table 2 from the article (http://www.nature.com/nrg/journal/v10/n4/index.html).

Usage

tfcensus_download()

Value

A data frame (tibble) listing transcription factors.

Examples

tfcensus <- tfcensus_download()
tfcensus
# # A tibble: 1,987 x 7
#    Class `Ensembl ID` `IPI ID` `Interpro DBD` `Interpro DNA-b.
#    <chr> <chr>        <chr>    <chr>          <chr>
#  1 a     ENSG0000000. IPI0021. NA             IPR001289
#  2 a     ENSG0000000. IPI0004. IPR000047;IPR. NA
#  3 a     ENSG0000000. IPI0001. IPR001356;IPR. NA
#  4 a     ENSG0000000. IPI0029. IPR000910;IPR. NA
#  5 a     ENSG0000000. IPI0001. IPR007087;IPR. IPR006794
# # . with 1,977 more rows, and 2 more variables: `HGNC symbol` <chr>,
# # `Tissue-specificity` <chr>

saezlab/OmnipathR documentation built on May 3, 2024, 5:32 a.m.