sartorlab/chipenrich.data
Companion package to chipenrich

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Man pages for sartorlab/chipenrich.data
Companion package to chipenrich

chipenrich.datachipenrich.data: Data for chipenrich: gene set enrichment...
enhancer.dnase_thurman.0Enhancer locations
gene.enh.descGene-Enhancer descriptives
geneset.biocarta_pathway.hsageneset.biocarta_pathway.hsa genesets for BioCarta
geneset.biocarta_pathway.mmugeneset.biocarta_pathway.mmu
geneset.biocarta_pathway.rnogeneset.biocarta_pathway.rno
GeneSet-classClass '"GeneSet"'
geneset.ctd.hsageneset.ctd.hsa genesets for Comparative Toxicogenomics...
geneset.ctd.mmugeneset.ctd.mmu genesets for Comparative Toxicogenomics...
geneset.cytoband.hsageneset.cytoband.hsa
geneset.drug_bank.hsageneset.drug_bank.hsa genesets for DrugBank
geneset.drug_bank.mmugeneset.drug_bank.mmu
geneset.drug_bank.rnogeneset.drug_bank.rno
geneset.GOBP.dmegeneset.GOBP.dme genesets for Drosophila melanogaster
geneset.GOBP.dregeneset.GOBP.dre genesets for Danio rerio
geneset.GOBP.hsageneset.GOBP.hsa genesets for Homo sapiens
geneset.GOBP.mmugeneset.GOBP.mmu genesets for Mus musculus
geneset.GOBP.rnogeneset.GOBP.rno genesets for Rattus norvegicus
geneset.GOCC.dmegeneset.GOCC.dme genesets for Drosophila melanogaster
geneset.GOCC.dregeneset.GOCC.dre genesets for Danio rerio
geneset.GOCC.hsageneset.GOCC.hsa genesets for Homo sapiens
geneset.GOCC.mmugeneset.GOCC.mmu genesets for Mus musculus
geneset.GOCC.rnogeneset.GOCC.rno genesets for Rattus norvegicus
geneset.GOMF.dmegeneset.GOMF.dme genesets for Drosophila melanogaster
geneset.GOMF.dregeneset.GOMF.dre genesets for Danio rerio
geneset.GOMF.hsageneset.GOMF.hsa genesets for Homo sapiens
geneset.GOMF.mmugeneset.GOMF.mmu genesets for Mus musculus
geneset.GOMF.rnogeneset.GOMF.rno genesets for Rattus norvegicus
geneset.hallmark.hsageneset.hallmark.hsa genesets for Hallmark (MSigDB)
geneset.immunologic.hsageneset.immunologic.hsa genesets for Immunologic Signatures...
geneset.kegg_pathway.hsageneset.kegg_pathway.hsa genesets for KEGG Pathways
geneset.kegg_pathway.mmugeneset.kegg_pathway.mmu
geneset.kegg_pathway.rnogeneset.kegg_pathway.rno
geneset.mesh.hsageneset.mesh.hsa
geneset.mesh.mmugeneset.mesh.mmu
geneset.mesh.rnogeneset.mesh.rno
geneset.metabolite.hsageneset.metabolite.hsa
geneset.metabolite.mmugeneset.metabolite.mmu
geneset.metabolite.rnogeneset.metabolite.rno
geneset.microrna.hsageneset.microrna.hsa genesets for MicroRNA Targets (MSigDB)
geneset.oncogenic.hsageneset.oncogenic.hsa genesets for Oncogenic Signatures...
geneset.panther_pathway.hsageneset.panther_pathway.hsa
geneset.panther_pathway.mmugeneset.panther_pathway.mmu
geneset.panther_pathway.rnogeneset.panther_pathway.rno
geneset.pfam.hsageneset.pfam.hsa genesets for Pfam
geneset.pfam.mmugeneset.pfam.mmu
geneset.pfam.rnogeneset.pfam.rno
geneset.protein_interaction_biogrid.hsageneset.protein_interaction_biogrid.hsa genesets for BioGRID...
geneset.reactome.dmegeneset.reactome.dme genesets for Drosophila melanogaster
geneset.reactome.dregeneset.reactome.dre genesets for Danio rerio
geneset.reactome.hsageneset.reactome.hsa genesets for Homo sapiens
geneset.reactome.mmugeneset.reactome.mmu genesets for Mus musculus
geneset.reactome.rnogeneset.reactome.rno genesets for Rattus norvegicus
geneset.transcription_factors.hsageneset.transcription_factors.hsa genesets for Transcription...
geneset.transcription_factors.mmugeneset.transcription_factors.mmu
geneset.transcription_factors.rnogeneset.transcription_factors.rno
locusdef.danRer10.10kblocusdef.danRer10.10kb locus definition
locusdef.danRer10.10kb_outsidelocusdef.danRer10.10kb_outside locus definition
locusdef.danRer10.10kb_outside_upstreamlocusdef.danRer10.10kb_outside_upstream locus definition
locusdef.danRer10.1kblocusdef.danRer10.1kb locus definition
locusdef.danRer10.1kb_outsidelocusdef.danRer10.1kb_outside locus definition
locusdef.danRer10.1kb_outside_upstreamlocusdef.danRer10.1kb_outside_upstream locus definition
locusdef.danRer10.5kblocusdef.danRer10.5kb locus definition
locusdef.danRer10.5kb_outsidelocusdef.danRer10.5kb_outside locus definition
locusdef.danRer10.5kb_outside_upstreamlocusdef.danRer10.5kb_outside_upstream locus definition
locusdef.danRer10.exonlocusdef.danRer10.exon locus definition
locusdef.danRer10.intronlocusdef.danRer10.intron locus definition
locusdef.danRer10.nearest_genelocusdef.danRer10.nearest_gene locus definition
locusdef.danRer10.nearest_tsslocusdef.danRer10.nearest_tss locus definition
locusdef.dm3.10kblocusdef.dm3.10kb locus definition
locusdef.dm3.10kb_outsidelocusdef.dm3.10kb_outside locus definition
locusdef.dm3.10kb_outside_upstreamlocusdef.dm3.10kb_outside_upstream locus definition
locusdef.dm3.1kblocusdef.dm3.1kb locus definition
locusdef.dm3.1kb_outsidelocusdef.dm3.1kb_outside locus definition
locusdef.dm3.1kb_outside_upstreamlocusdef.dm3.1kb_outside_upstream locus definition
locusdef.dm3.5kblocusdef.dm3.5kb locus definition
locusdef.dm3.5kb_outsidelocusdef.dm3.5kb_outside locus definition
locusdef.dm3.5kb_outside_upstreamlocusdef.dm3.5kb_outside_upstream locus definition
locusdef.dm3.exonlocusdef.dm3.exon locus definition
locusdef.dm3.intronlocusdef.dm3.intron locus definition
locusdef.dm3.nearest_genelocusdef.dm3.nearest_gene locus definition
locusdef.dm3.nearest_tsslocusdef.dm3.nearest_tss locus definition
locusdef.dm6.10kblocusdef.dm6.10kb locus definition
locusdef.dm6.10kb_outsidelocusdef.dm6.10kb_outside locus definition
locusdef.dm6.10kb_outside_upstreamlocusdef.dm6.10kb_outside_upstream locus definition
locusdef.dm6.1kblocusdef.dm6.1kb locus definition
locusdef.dm6.1kb_outsidelocusdef.dm6.1kb_outside locus definition
locusdef.dm6.1kb_outside_upstreamlocusdef.dm6.1kb_outside_upstream locus definition
locusdef.dm6.5kblocusdef.dm6.5kb locus definition
locusdef.dm6.5kb_outsidelocusdef.dm6.5kb_outside locus definition
locusdef.dm6.5kb_outside_upstreamlocusdef.dm6.5kb_outside_upstream locus definition
locusdef.dm6.exonlocusdef.dm6.exon locus definition
locusdef.dm6.intronlocusdef.dm6.intron locus definition
locusdef.dm6.nearest_genelocusdef.dm6.nearest_gene locus definition
locusdef.dm6.nearest_tsslocusdef.dm6.nearest_tss locus definition
locusdef.hg19.10kblocusdef.hg19.10kb locus definition
locusdef.hg19.10kb_outsidelocusdef.hg19.10kb_outside locus definition
locusdef.hg19.10kb_outside_upstreamlocusdef.hg19.10kb_outside_upstream locus definition
locusdef.hg19.1kblocusdef.hg19.1kb locus definition
locusdef.hg19.1kb_outsidelocusdef.hg19.1kb_outside locus definition
locusdef.hg19.1kb_outside_upstreamlocusdef.hg19.1kb_outside_upstream locus definition
locusdef.hg19.5kblocusdef.hg19.5kb locus definition
locusdef.hg19.5kb_outsidelocusdef.hg19.5kb_outside locus definition
locusdef.hg19.5kb_outside_upstreamlocusdef.hg19.5kb_outside_upstream locus definition
locusdef.hg19.exonlocusdef.hg19.exon locus definition
locusdef.hg19.intronlocusdef.hg19.intron locus definition
locusdef.hg19.nearest_genelocusdef.hg19.nearest_gene locus definition
locusdef.hg19.nearest_tsslocusdef.hg19.nearest_tss locus definition
locusdef.hg38.10kblocusdef.hg38.10kb locus definition
locusdef.hg38.10kb_outsidelocusdef.hg38.10kb_outside locus definition
locusdef.hg38.10kb_outside_upstreamlocusdef.hg38.10kb_outside_upstream locus definition
locusdef.hg38.1kblocusdef.hg38.1kb locus definition
locusdef.hg38.1kb_outsidelocusdef.hg38.1kb_outside locus definition
locusdef.hg38.1kb_outside_upstreamlocusdef.hg38.1kb_outside_upstream locus definition
locusdef.hg38.5kblocusdef.hg38.5kb locus definition
locusdef.hg38.5kb_outsidelocusdef.hg38.5kb_outside locus definition
locusdef.hg38.5kb_outside_upstreamlocusdef.hg38.5kb_outside_upstream locus definition
locusdef.hg38.exonlocusdef.hg38.exon locus definition
locusdef.hg38.intronlocusdef.hg38.intron locus definition
locusdef.hg38.nearest_genelocusdef.hg38.nearest_gene locus definition
locusdef.hg38.nearest_tsslocusdef.hg38.nearest_tss locus definition
LocusDefinition-classClass '"LocusDefinition"'
locusdef.mm10.10kblocusdef.mm10.10kb locus definition
locusdef.mm10.10kb_outsidelocusdef.mm10.10kb_outside locus definition
locusdef.mm10.10kb_outside_upstreamlocusdef.mm10.10kb_outside_upstream locus definition
locusdef.mm10.1kblocusdef.mm10.1kb locus definition
locusdef.mm10.1kb_outsidelocusdef.mm10.1kb_outside locus definition
locusdef.mm10.1kb_outside_upstreamlocusdef.mm10.1kb_outside_upstream locus definition
locusdef.mm10.5kblocusdef.mm10.5kb locus definition
locusdef.mm10.5kb_outsidelocusdef.mm10.5kb_outside locus definition
locusdef.mm10.5kb_outside_upstreamlocusdef.mm10.5kb_outside_upstream locus definition
locusdef.mm10.exonlocusdef.mm10.exon locus definition
locusdef.mm10.intronlocusdef.mm10.intron locus definition
locusdef.mm10.nearest_genelocusdef.mm10.nearest_gene locus definition
locusdef.mm10.nearest_tsslocusdef.mm10.nearest_tss locus definition
locusdef.mm9.10kblocusdef.mm9.10kb locus definition
locusdef.mm9.10kb_outsidelocusdef.mm9.10kb_outside locus definition
locusdef.mm9.10kb_outside_upstreamlocusdef.mm9.10kb_outside_upstream locus definition
locusdef.mm9.1kblocusdef.mm9.1kb locus definition
locusdef.mm9.1kb_outsidelocusdef.mm9.1kb_outside locus definition
locusdef.mm9.1kb_outside_upstreamlocusdef.mm9.1kb_outside_upstream locus definition
locusdef.mm9.5kblocusdef.mm9.5kb locus definition
locusdef.mm9.5kb_outsidelocusdef.mm9.5kb_outside locus definition
locusdef.mm9.5kb_outside_upstreamlocusdef.mm9.5kb_outside_upstream locus definition
locusdef.mm9.exonlocusdef.mm9.exon locus definition
locusdef.mm9.intronlocusdef.mm9.intron locus definition
locusdef.mm9.nearest_genelocusdef.mm9.nearest_gene locus definition
locusdef.mm9.nearest_tsslocusdef.mm9.nearest_tss locus definition
locusdef.rn4.10kblocusdef.rn4.10kb locus definition
locusdef.rn4.10kb_outsidelocusdef.rn4.10kb_outside locus definition
locusdef.rn4.10kb_outside_upstreamlocusdef.rn4.10kb_outside_upstream locus definition
locusdef.rn4.1kblocusdef.rn4.1kb locus definition
locusdef.rn4.1kb_outsidelocusdef.rn4.1kb_outside locus definition
locusdef.rn4.1kb_outside_upstreamlocusdef.rn4.1kb_outside_upstream locus definition
locusdef.rn4.5kblocusdef.rn4.5kb locus definition
locusdef.rn4.5kb_outsidelocusdef.rn4.5kb_outside locus definition
locusdef.rn4.5kb_outside_upstreamlocusdef.rn4.5kb_outside_upstream locus definition
locusdef.rn4.exonlocusdef.rn4.exon locus definition
locusdef.rn4.intronlocusdef.rn4.intron locus definition
locusdef.rn4.nearest_genelocusdef.rn4.nearest_gene locus definition
locusdef.rn4.nearest_tsslocusdef.rn4.nearest_tss locus definition
locusdef.rn5.10kblocusdef.rn5.10kb locus definition
locusdef.rn5.10kb_outsidelocusdef.rn5.10kb_outside locus definition
locusdef.rn5.10kb_outside_upstreamlocusdef.rn5.10kb_outside_upstream locus definition
locusdef.rn5.1kblocusdef.rn5.1kb locus definition
locusdef.rn5.1kb_outsidelocusdef.rn5.1kb_outside locus definition
locusdef.rn5.1kb_outside_upstreamlocusdef.rn5.1kb_outside_upstream locus definition
locusdef.rn5.5kblocusdef.rn5.5kb locus definition
locusdef.rn5.5kb_outsidelocusdef.rn5.5kb_outside locus definition
locusdef.rn5.5kb_outside_upstreamlocusdef.rn5.5kb_outside_upstream locus definition
locusdef.rn5.exonlocusdef.rn5.exon locus definition
locusdef.rn5.intronlocusdef.rn5.intron locus definition
locusdef.rn5.nearest_genelocusdef.rn5.nearest_gene locus definition
locusdef.rn5.nearest_tsslocusdef.rn5.nearest_tss locus definition
locusdef.rn6.10kblocusdef.rn6.10kb locus definition
locusdef.rn6.10kb_outsidelocusdef.rn6.10kb_outside locus definition
locusdef.rn6.10kb_outside_upstreamlocusdef.rn6.10kb_outside_upstream locus definition
locusdef.rn6.1kblocusdef.rn6.1kb locus definition
locusdef.rn6.1kb_outsidelocusdef.rn6.1kb_outside locus definition
locusdef.rn6.1kb_outside_upstreamlocusdef.rn6.1kb_outside_upstream locus definition
locusdef.rn6.5kblocusdef.rn6.5kb locus definition
locusdef.rn6.5kb_outsidelocusdef.rn6.5kb_outside locus definition
locusdef.rn6.5kb_outside_upstreamlocusdef.rn6.5kb_outside_upstream locus definition
locusdef.rn6.exonlocusdef.rn6.exon locus definition
locusdef.rn6.intronlocusdef.rn6.intron locus definition
locusdef.rn6.nearest_genelocusdef.rn6.nearest_gene locus definition
locusdef.rn6.nearest_tsslocusdef.rn6.nearest_tss locus definition
mappa.hg19.10kb.100mermappa.hg19.10kb.100mer
mappa.hg19.10kb.24mermappa.hg19.10kb.24mer
mappa.hg19.10kb.36mermappa.hg19.10kb.36mer
mappa.hg19.10kb.40mermappa.hg19.10kb.40mer
mappa.hg19.10kb.50mermappa.hg19.10kb.50mer
mappa.hg19.10kb.75mermappa.hg19.10kb.75mer
mappa.hg19.1kb.100mermappa.hg19.1kb.100mer
mappa.hg19.1kb.24mermappa.hg19.1kb.24mer
mappa.hg19.1kb.36mermappa.hg19.1kb.36mer
mappa.hg19.1kb.40mermappa.hg19.1kb.40mer
mappa.hg19.1kb.50mermappa.hg19.1kb.50mer
mappa.hg19.1kb.75mermappa.hg19.1kb.75mer
mappa.hg19.5kb.100mermappa.hg19.5kb.100mer
mappa.hg19.5kb.24mermappa.hg19.5kb.24mer
mappa.hg19.5kb.36mermappa.hg19.5kb.36mer
mappa.hg19.5kb.40mermappa.hg19.5kb.40mer
mappa.hg19.5kb.50mermappa.hg19.5kb.50mer
mappa.hg19.5kb.75mermappa.hg19.5kb.75mer
mappa.hg19.exon.100mermappa.hg19.exon.100mer
mappa.hg19.exon.24mermappa.hg19.exon.24mer
mappa.hg19.exon.36mermappa.hg19.exon.36mer
mappa.hg19.exon.40mermappa.hg19.exon.40mer
mappa.hg19.exon.50mermappa.hg19.exon.50mer
mappa.hg19.exon.75mermappa.hg19.exon.75mer
mappa.hg19.intron.100mermappa.hg19.intron.100mer
mappa.hg19.intron.24mermappa.hg19.intron.24mer
mappa.hg19.intron.36mermappa.hg19.intron.36mer
mappa.hg19.intron.40mermappa.hg19.intron.40mer
mappa.hg19.intron.50mermappa.hg19.intron.50mer
mappa.hg19.intron.75mermappa.hg19.intron.75mer
mappa.hg19.nearest_gene.100mermappa.hg19.nearest_gene.100mer
mappa.hg19.nearest_gene.24mermappa.hg19.nearest_gene.24mer
mappa.hg19.nearest_gene.36mermappa.hg19.nearest_gene.36mer
mappa.hg19.nearest_gene.40mermappa.hg19.nearest_gene.40mer
mappa.hg19.nearest_gene.50mermappa.hg19.nearest_gene.50mer
mappa.hg19.nearest_gene.75mermappa.hg19.nearest_gene.75mer
mappa.hg19.nearest_tss.100mermappa.hg19.nearest_tss.100mer
mappa.hg19.nearest_tss.24mermappa.hg19.nearest_tss.24mer
mappa.hg19.nearest_tss.36mermappa.hg19.nearest_tss.36mer
mappa.hg19.nearest_tss.40mermappa.hg19.nearest_tss.40mer
mappa.hg19.nearest_tss.50mermappa.hg19.nearest_tss.50mer
mappa.hg19.nearest_tss.75mermappa.hg19.nearest_tss.75mer
mappa.mm9.10kb.100mermappa.mm9.10kb.100mer
mappa.mm9.10kb.36mermappa.mm9.10kb.36mer
mappa.mm9.10kb.40mermappa.mm9.10kb.40mer
mappa.mm9.10kb.50mermappa.mm9.10kb.50mer
mappa.mm9.10kb.75mermappa.mm9.10kb.75mer
mappa.mm9.1kb.100mermappa.mm9.1kb.100mer
mappa.mm9.1kb.36mermappa.mm9.1kb.36mer
mappa.mm9.1kb.40mermappa.mm9.1kb.40mer
mappa.mm9.1kb.50mermappa.mm9.1kb.50mer
mappa.mm9.1kb.75mermappa.mm9.1kb.75mer
mappa.mm9.5kb.100mermappa.mm9.5kb.100mer
mappa.mm9.5kb.36mermappa.mm9.5kb.36mer
mappa.mm9.5kb.40mermappa.mm9.5kb.40mer
mappa.mm9.5kb.50mermappa.mm9.5kb.50mer
mappa.mm9.5kb.75mermappa.mm9.5kb.75mer
mappa.mm9.exon.100mermappa.mm9.exon.100mer
mappa.mm9.exon.36mermappa.mm9.exon.36mer
mappa.mm9.exon.40mermappa.mm9.exon.40mer
mappa.mm9.exon.50mermappa.mm9.exon.50mer
mappa.mm9.exon.75mermappa.mm9.exon.75mer
mappa.mm9.intron.100mermappa.mm9.intron.100mer
mappa.mm9.intron.36mermappa.mm9.intron.36mer
mappa.mm9.intron.40mermappa.mm9.intron.40mer
mappa.mm9.intron.50mermappa.mm9.intron.50mer
mappa.mm9.intron.75mermappa.mm9.intron.75mer
mappa.mm9.nearest_gene.100mermappa.mm9.nearest_gene.100mer
mappa.mm9.nearest_gene.36mermappa.mm9.nearest_gene.36mer
mappa.mm9.nearest_gene.40mermappa.mm9.nearest_gene.40mer
mappa.mm9.nearest_gene.50mermappa.mm9.nearest_gene.50mer
mappa.mm9.nearest_gene.75mermappa.mm9.nearest_gene.75mer
mappa.mm9.nearest_tss.100mermappa.mm9.nearest_tss.100mer
mappa.mm9.nearest_tss.36mermappa.mm9.nearest_tss.36mer
mappa.mm9.nearest_tss.40mermappa.mm9.nearest_tss.40mer
mappa.mm9.nearest_tss.50mermappa.mm9.nearest_tss.50mer
mappa.mm9.nearest_tss.75mermappa.mm9.nearest_tss.75mer
peaks_E2F4ChIP-seq Peaks for the E2F4 Transcription Factor
peaks_H3K4me3_GM12878ChIP-seq Peaks for the Histone Modification H3K4me3 in...
spline.log_dtss.90ENCODEDTSS Spline adjustment
tss.danRer10tss.danRer10 TSS locations
tss.dm3tss.dm3 TSS locations
tss.dm6tss.dm6 TSS locations
tss.hg19tss.hg19 TSS locations
tss.hg38tss.hg38 TSS locations
tss.mm10tss.mm10 TSS locations
tss.mm9tss.mm9 TSS locations
tss.rn4tss.rn4 TSS locations
tss.rn5tss.rn5 TSS locations
tss.rn6tss.rn6 TSS locations
sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.

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