Man pages for sbrn3/disscat
Calculates Distances Between Single Cell RNA Seq Categories
| AddMetaDataMatrix | Add cell wise data to seurat object |
| average_distance | Calculates the average distance between groups in seurat... |
| AverageDistance | Calculates the average distance between groups for a list of... |
| average_linkage_distance | Calculates the average linkage distance between two clusters |
| BarPlot | Plot bar chart of cell counts |
| cell_total_linkage | Calculates the distance from this cell to all other cells |
| centroid_linkage_distance | Calculates the centroid linkage distance between two clusters |
| complete_linkage_distance | Calculates the complete linkage distance between two clusters |
| DenPlot | Create density plot from seurat object |
| DimPlotFacet | Splits scatter plots into multiple facets |
| EvennessPlot | Plots the evenness of spread of one group across another... |
| FilterSplits | Filters out split factors that are not present in all of your... |
| GetDistance | Get distance data from seurat object |
| GetEvenness | Returns evenness table stored in seurat object |
| GetSlingshot | Return slingshot object stored in a seurat object |
| group_distance | Calculates the distance between groups in seurat object |
| GroupDistance | Calculates the distance between Categories of single cells |
| group_mean | Calculates the means of each factor in a categorical variable |
| internal_distance | Calculate the distance of all the points within a single... |
| InternalDistance | Calculates internal distance |
| internal_linkage_distance | Internal distance points in a cluster and the cluster... |
| internal_mahalanobis_distance | Mahalanobis distance of points in a cluster and the cluster... |
| mahalanobis_distance | Calculates the mahalanobis distance between two clusters |
| MergeSeurat | Merges Seurat Objects |
| PlotAverageDistance | Plots the average distance between two factors of a group |
| plot_distance | Plots the distance between two groups using a number of... |
| PlotDistance | Plots the distances next to each other |
| PlotGroupMeans | Plots the groups as well as their cluster means |
| PlotInternalDistance | Plots the internal distances |
| PlotSlingshot | Plots slingshot curves stored in a seurat object. |
| PlotTotalDistance | Plots the total distance between two factors of a group as a... |
| RunCramer | Cramer test on different groups in seurat object |
| RunEvenness | Calculates the evenness of one group across a list of objects |
| RunPLSDA | Runs PLS-DA dimensionality reduction on seurat object |
| RunPseudotime | Calculates the pseudotime of a object with multiple time... |
| RunSlingshot | Returns a slingshot based on the plsda of a seurat object |
| single_linkage_distance | Calculates the single linkage distance between two clusters |
| species_evenness | Calculates the evenness of a vector |
| standard_error | Calculates the standard error of a vector |
| total_distance | Calculates the total distance between groups in seurat object |
| TotalDistance | Calculates the total distance between groups for a list of... |
| total_linkage | Calculates the Total linkage between two groups |
| TransferPLSDA | Transfer the plsda variate manifold between datasets |
| TransferSlingshot | Transfer Slingshot pseudotime dimension to other seurat... |
| VisualisePseudotime | Plot some of the pseudotime results |
| ward_distance | Calculates the ward distance between two clusters |
