Description Usage Arguments Value
Calculates the distance between the closet pair of points between two clusters.
1 2 | average_distance(seurat_object, group, reduction = "pca", dims = 1:30,
distance = "euclidian", output = "seurat")
|
seurat_object |
A seurat object |
group |
Seurat Categories or groups for which the distances between are calculated. Cell wise data. |
reduction |
Dimensionality reduction data to use |
dims |
Which dimensions to use |
distance |
Point to point distance to use. Options are "euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski" |
output |
Output type. Default is "seurat". Options are "seurat" (Seurat S4 object), "list" (List of tables by split_by), "seurat_list" (List of Seurat objects). Seurat objects returned have the distance data stored internally. |
Distances between groups
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