InternalDistance: Calculates internal distance

In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories

Description

Calculates internal distance

Usage

InternalDistance(seurat_object, group = NULL, reduction = "pca",
  dims = 1:30, method = "linkage", distance = "euclidean",
  split_by = NULL, output = "seurat")

Arguments

seurat_object	A seurat object
group	Seurat Categories or groups for which the distances between are calculated. Cell wise data.
reduction	Dimensionality reduction data to use
dims	Which dimensions to use
method	Cluster Distance methods to use. Options are "single", "complete", "average", "centroid", "ward", "mahalanobis". Further explanation for these methods is given in the details.
distance	Point to point distance to use. Options are "euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski"
split_by	Second seurat category to split the calculations over.
output	Whether to output as a seurat object (with data stored within) or as a table containing the information.

Details

For more information about the implementation of this method see the other methods in this function family.

Value

Table or Seurat object with internal distance information

See Also

Other internal_distance: internal_distance, internal_linkage_distance, internal_mahalanobis_distance

sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.