Description Usage Arguments Details Value See Also
Calculates internal distance
1 2 3 | InternalDistance(seurat_object, group = NULL, reduction = "pca",
dims = 1:30, method = "linkage", distance = "euclidean",
split_by = NULL, output = "seurat")
|
seurat_object |
A seurat object |
group |
Seurat Categories or groups for which the distances between are calculated. Cell wise data. |
reduction |
Dimensionality reduction data to use |
dims |
Which dimensions to use |
method |
Cluster Distance methods to use. Options are "single", "complete", "average", "centroid", "ward", "mahalanobis". Further explanation for these methods is given in the details. |
distance |
Point to point distance to use. Options are "euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski" |
split_by |
Second seurat category to split the calculations over. |
output |
Whether to output as a seurat object (with data stored within) or as a table containing the information. |
For more information about the implementation of this method see the other methods in this function family.
Table or Seurat object with internal distance information
Other internal_distance: internal_distance
,
internal_linkage_distance
,
internal_mahalanobis_distance
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