TransferSlingshot: Transfer Slingshot pseudotime dimension to other seurat...
In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories
Description
Usage
Arguments
Value
Description
If you would like to cast a naive dataset into the same pseudotime as some
other dataset. This does require that you have performed the same
dimensionality reduction on both datasets.
Usage
1
TransferSlingshot(reference, query, reduction = "plsda", dims = 1:10)
Arguments
reference
Seurat object
query
Seurat object
reduction
Reduction method. Default is "plsda"
dims
Dimensions used in slingshot pseudotime calculation.
Value
Query dataset but with pseudotime values
sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.
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Description Usage Arguments Value
Description
If you would like to cast a naive dataset into the same pseudotime as some other dataset. This does require that you have performed the same dimensionality reduction on both datasets.
Usage
1 | TransferSlingshot(reference, query, reduction = "plsda", dims = 1:10)
|
Arguments
reference |
Seurat object |
query |
Seurat object |
reduction |
Reduction method. Default is "plsda" |
dims |
Dimensions used in slingshot pseudotime calculation. |
Value
Query dataset but with pseudotime values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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