PlotInternalDistance: Plots the internal distances
In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories
Description
Usage
Arguments
Value
Description
Creates a bar plot of internal distances.
Usage
1
2
PlotInternalDistance(seurat_object, group = NULL, split_by = NULL,
method = "linkage", error_bars = "sd", rotate_x = 90)
Arguments
seurat_object
A seurat object
group
Seurat Categories or groups for which the distances between
are calculated. Cell wise data.
split_by
Second seurat category to split the calculations over.
method
Cluster Distance methods to use. Options are "single",
"complete", "average", "centroid", "ward", "mahalanobis". Further explanation
for these methods is given in the details.
Value
Bar bar plot of distances
sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.
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Description Usage Arguments Value
Description
Creates a bar plot of internal distances.
Usage
1 2 | PlotInternalDistance(seurat_object, group = NULL, split_by = NULL,
method = "linkage", error_bars = "sd", rotate_x = 90)
|
Arguments
seurat_object |
A seurat object |
group |
Seurat Categories or groups for which the distances between are calculated. Cell wise data. |
split_by |
Second seurat category to split the calculations over. |
method |
Cluster Distance methods to use. Options are "single", "complete", "average", "centroid", "ward", "mahalanobis". Further explanation for these methods is given in the details. |
Value
Bar bar plot of distances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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